GitHub - misko/minichr: Mini Chromosome

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 178 Commits
arc_coverage		arc_coverage
clustering		clustering
cplex		cplex
drawing		drawing
eval_arrays		eval_arrays
gc		gc
genes		genes
getcov		getcov
mpileup		mpileup
pipeline		pipeline
scripts		scripts
simulation		simulation
walker		walker
centromeres_merged		centromeres_merged
cnv_hmm.cpp		cnv_hmm.cpp
cnv_hmm_chrm.cpp		cnv_hmm_chrm.cpp
combine_clusters.py		combine_clusters.py
commands		commands
compare_sandborn.py		compare_sandborn.py
connect_components.py		connect_components.py
decompose_and_report.py		decompose_and_report.py
decompose_flow.py		decompose_flow.py
decompose_flow_v2.py		decompose_flow_v2.py
decompose_flow_v3.py		decompose_flow_v3.py
decompose_flow_v4.py		decompose_flow_v4.py
decompose_flow_v5.py		decompose_flow_v5.py
edges		edges
filter_bwa_mq.py		filter_bwa_mq.py
genes_to_vector.py		genes_to_vector.py
get_analysis_ids.py		get_analysis_ids.py
get_copy.py		get_copy.py
get_group.sh		get_group.sh
get_ref.py		get_ref.py
grab_files.sh		grab_files.sh
grab_files_v2.sh		grab_files_v2.sh
grab_files_v3.sh		grab_files_v3.sh
grab_files_v3_just_cov.sh		grab_files_v3_just_cov.sh
gurobi_to_lp.py		gurobi_to_lp.py
hg18_centro_plus3p5mil.txt		hg18_centro_plus3p5mil.txt
hg18_centromeres.txt		hg18_centromeres.txt
hg19_centro_plus3p5mil.txt		hg19_centro_plus3p5mil.txt
hg19_centromeres.txt		hg19_centromeres.txt
hmm		hmm
insert_no_flows.py		insert_no_flows.py
just_clusters.sh		just_clusters.sh
make_clusters.sh		make_clusters.sh
make_decompose.sh		make_decompose.sh
make_decompose_v3.sh		make_decompose_v3.sh
make_decompose_v4.sh		make_decompose_v4.sh
make_overlaps.sh		make_overlaps.sh
make_overlaps_wbigwig.sh		make_overlaps_wbigwig.sh
make_overlaps_wbigwig_recover.sh		make_overlaps_wbigwig_recover.sh
make_walker.sh		make_walker.sh
make_walker_worker.sh		make_walker_worker.sh
make_walker_worker_v2.sh		make_walker_worker_v2.sh
make_walker_worker_v3.sh		make_walker_worker_v3.sh
make_walker_worker_v4.sh		make_walker_worker_v4.sh
mv3.sh		mv3.sh
old_mini_chrom.cpp		old_mini_chrom.cpp
parse_hmm.py		parse_hmm.py
racket_mod.rkt		racket_mod.rkt
recover_grab_files.sh		recover_grab_files.sh
recover_grab_files_v2.sh		recover_grab_files_v2.sh
run.sh		run.sh
run_hmm.sh		run_hmm.sh
run_mc.sh		run_mc.sh
run_mc_circulation.sh		run_mc_circulation.sh
sam_headers		sam_headers