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[spglib] update to 2.5.0 #41658

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[spglib] update to 2.5.0 #41658

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@Cheney-W Cheney-W added the category:port-update The issue is with a library, which is requesting update new revision label Oct 21, 2024
@Cheney-W Cheney-W added the info:reviewed Pull Request changes follow basic guidelines label Oct 21, 2024
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