Merge pull request #5 from microscopic-image-analysis/fixing-requirem…

…ents.txt

fewer dependencies that are fixed

requirements.txt

@@ -1,168 +1,9 @@
-absl-py==2.1.0
-alabaster==0.7.16
-app-model==0.2.4
-appdirs==1.4.4
-asttokens==2.4.1
-astunparse==1.6.3
-attrs==23.2.0
-Babel==2.14.0
--e git+https://github.com/microscopic-image-analysis/bayes-mef.git@366e654b2cfa5ab2b426d6d890638c6452bc624a#egg=bayes_mef
-black==23.12.1
-blosc2==2.5.1
-bokeh==3.3.4
-build==1.1.1
-cachetools==5.3.3
-cachey==0.2.1
-certifi==2024.2.2
-charset-normalizer==3.3.2
-click==8.1.7
-cloudpickle==3.0.0
-comm==0.2.1
-contourpy==1.2.0
-cycler==0.12.1
-dask==2024.3.0
-debugpy==1.8.1
-decorator==5.1.1
-docstring-parser==0.15
-docutils==0.20.1
-executing==2.0.1
-flatbuffers==24.3.7
-fonttools==4.49.0
-freetype-py==2.4.0
-fsspec==2024.2.0
-gast==0.4.0
-google-auth==2.28.2
-google-auth-oauthlib==1.0.0
-google-pasta==0.2.0
-grpcio==1.62.1
 h5py==3.10.0
-HeapDict==1.0.1
-hsluv==5.0.4
-idna==3.6
-imageio==2.34.0
-imagesize==1.4.1
-importlib_metadata==7.0.2
-in-n-out==0.1.9
-ipykernel==6.29.3
-ipython==8.18.1
-jedi==0.19.1
-Jinja2==3.1.3
 joblib==1.3.2
-jsonschema==4.21.1
-jsonschema-specifications==2023.12.1
-jupyter_client==8.6.1
-jupyter_core==5.7.2
-keras==2.13.1
-kiwisolver==1.4.5
-lazy_loader==0.3
-libclang==16.0.6
-llvmlite==0.42.0
-locket==1.0.0
-magicgui==0.8.2
-Markdown==3.5.2
-markdown-it-py==3.0.0
-MarkupSafe==2.1.5
 matplotlib==3.8.3
-matplotlib-inline==0.1.6
-mdurl==0.1.2
-msgpack==1.0.8
-mypy-extensions==1.0.0
-napari==0.4.19.post1
-napari-console==0.0.9
-napari-plugin-engine==0.2.0
-napari-plugin-manager==0.1.0a2
-napari-svg==0.1.10
-ndindex==1.8
-nest-asyncio==1.6.0
-networkx==3.2.1
-npe2==0.7.4
-numba==0.59.0
-numexpr==2.9.0
 numpy==1.24.3
-numpydoc==1.6.0
-oauthlib==3.2.2
-opt-einsum==3.3.0
-packaging==24.0
-pandas==2.2.1
-parso==0.8.3
-partd==1.4.1
-pathspec==0.12.1
-pexpect==4.9.0
-pillow==10.2.0
-Pint==0.23
-platformdirs==4.2.0
-pooch==1.8.1
-prompt-toolkit==3.0.43
-protobuf==4.25.3
-psutil==5.9.8
-psygnal==0.10.1
-ptylab @ git+https://github.com/PtyLab/PtyLab.py.git@94663644c36722b2dc16011c33048a183a9f92de
-ptyprocess==0.7.0
-pure-eval==0.2.2
-py-cpuinfo==9.0.0
-pyasn1==0.5.1
-pyasn1-modules==0.3.0
-pyconify==0.1.6
-pydantic==1.10.14
-pydantic-compat==0.1.2
-Pygments==2.17.2
-PyOpenGL==3.1.7
-pyparsing==3.1.2
-pyproject_hooks==1.0.0
-PyQt5==5.15.10
-PyQt5-Qt5==5.15.2
-PyQt5-sip==12.13.0
-pyqtgraph==0.13.4
-python-dateutil==2.9.0.post0
-pytz==2024.1
-PyWavelets==1.5.0
-PyYAML==6.0.1
-pyzmq==25.1.2
-qtconsole==5.5.1
-QtPy==2.4.1
-referencing==0.33.0
-requests==2.31.0
-requests-oauthlib==1.4.0
-rich==13.7.1
-rpds-py==0.18.0
-rsa==4.9
+scipy==1.13.0
 scikit-image==0.21.0
-scikit-learn==1.4.1.post1
-scipy==1.12.0
-six==1.16.0
-snowballstemmer==2.2.0
-Sphinx==7.2.6
-sphinxcontrib-applehelp==1.0.8
-sphinxcontrib-devhelp==1.0.6
-sphinxcontrib-htmlhelp==2.0.5
-sphinxcontrib-jsmath==1.0.1
-sphinxcontrib-qthelp==1.0.7
-sphinxcontrib-serializinghtml==1.1.10
-stack-data==0.6.3
-superqt==0.6.2
-tables==3.9.2
-tabulate==0.9.0
-tensorboard==2.13.0
-tensorboard-data-server==0.7.2
-tensorflow==2.13.0
-tensorflow-estimator==2.13.0
-tensorflow-io-gcs-filesystem==0.36.0
-termcolor==2.4.0
-threadpoolctl==3.3.0
-tifffile==2024.2.12
-tomli_w==1.0.0
-toolz==0.12.1
-tornado==6.4
 tqdm==4.66.2
-traitlets==5.14.2
-triangle==20230923
-typer==0.9.0
-typing_extensions==4.5.0
-tzdata==2024.1
-urllib3==2.2.1
-vispy==0.14.1
-wcwidth==0.2.13
-Werkzeug==3.0.1
-wrapt==1.16.0
-xyzservices==2023.10.1
-zipp==3.17.0
+ptylab @ git+https://github.com/PtyLab/PtyLab.py.git
+-e .