Skip to content

Issues: microbiomedata/nmdc_automation

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

32 Open 145 Closed
32 Open 145 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Added stats.json output for ReadsQC (v1.0.13)
#283 opened Nov 7, 2024 by vlilanl
1 task
Watcher running with nmdc-dev configuration finds jobs but no data objects for the jobs
#282 opened Nov 6, 2024 by mbthornton-lbl
@mbthornton-lbl
get_token errors when testing on dev import priority-high
#280 opened Nov 4, 2024 by aclum
@mbthornton-lbl
MagsAnalysis import automation when no bins present import
#276 opened Oct 18, 2024 by aclum
add linkml validation to unit tests where nmdc-schema database records are made
#270 opened Oct 10, 2024 by aclum
@mbthornton-lbl
berkeley add data_category to workflow automation records berkeley-rollout-post-mvp-eligible does not block rolling out the MVP, still targeted for Oct
#266 opened Oct 8, 2024 by aclum
@mbthornton-lbl
add tests for validating json records against nmdc-schema testing
#261 opened Oct 1, 2024 by aclum
1
import automation logic when import files don't have upstream records. import
#260 opened Oct 1, 2024 by aclum
annotation update for JGI annotation 5.3
#249 opened Sep 16, 2024 by aclum
1 of 3 tasks
update author list of pyproject.toml
#238 opened Aug 20, 2024 by aclum
add code to generate input.jsons for steps defined in workflows-mt.yaml backlog
#230 opened Aug 6, 2024 by aclum
@mbthornton-lbl
5
Create test instance of each workflow that leaverage Berkeley schema & new runtime backlog
#220 opened Jul 24, 2024 by mbthornton-lbl
10 tasks
@mbthornton-lbl
2
Add some tracing logic to help debug things enhancement New feature or request
#207 opened Jul 2, 2024 by scanon
MG Annotation v1.1.1
#205 opened Jul 1, 2024 by kaijli
Add md5sum checks for data copied to results folder
#192 opened Jun 13, 2024 by aclum
@mbthornton-lbl
1
Implement JAWS API wrapper
#190 opened Jun 12, 2024 by mbthornton-lbl
@mbthornton-lbl
metaAssembly output update (v1.0.5)
#189 opened Jun 11, 2024 by vlilanl
3 tasks
@scanon @mbthornton-lbl
1
Data QC: workflow_execution_has_input_data_objects
#176 opened May 16, 2024 by mbthornton-lbl
5
Document the scheduler script documentation Improvements or additions to documentation
#146 opened May 2, 2024 by eecavanna
Update README and code documentation for JGI file staging
#84 opened Apr 9, 2024 by mbthornton-lbl
@mbthornton-lbl
automation support for long read assembly
#82 opened Mar 29, 2024 by aclum
@scanon @kaijli @vlilanl
Fix error in jgi_file_metadata.py
#76 opened Mar 20, 2024 by mbthornton-lbl
@mbthornton-lbl
1
Add dexterity to version picking in scheduler
#62 opened Feb 21, 2024 by Michal-Babins
Test jaws with nmdc_automation integration
#53 opened Feb 7, 2024 by Michal-Babins
@mbthornton-lbl
Duplicate records with incorrect versioning - NEON backlog
#54 opened Dec 21, 2023 by aclum
1 of 3 tasks
@mbthornton-lbl
12
ProTip! Exclude everything labeled bug with -label:bug.