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104 Open 315 Closed
104 Open 315 Closed
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Issues list

Update PR template to produce easier-to-read PR descriptions cleanup 🧹 Related to cleaning up code, documentation, etc. documentation Improvements or additions to documentation unplanned-task not accounted for during sprint planning, but time sensitive X SMALL Less than 1 day
#758 opened Nov 9, 2024 by eecavanna
3 tasks
1
@eecavanna
Modify GOLD ETL code to check existing records and only create missing records. enhancement New feature or request priority
#756 opened Nov 7, 2024 by aclum
@sujaypatil96
[Parent] Make nmdc-runtime development environment setup easier
#755 opened Nov 7, 2024 by PeopleMakeCulture
@mkshah605 @PeopleMakeCulture
2
Update submission portal to mongo ETL to support specifying external data
#753 opened Nov 5, 2024 by aclum
@pkalita-lbl
Expose Auth Token to API user for CLI Client
#742 opened Oct 30, 2024 by PeopleMakeCulture
@dwinston @PeopleMakeCulture
7
Update /data_objects/study/{study_id} so it supports umbrella/parents studies as well enhancement New feature or request
#740 opened Oct 29, 2024 by sujaypatil96
@sujaypatil96
Longer lived access tokens enhancement New feature or request
#737 opened Oct 22, 2024 by shreddd
Create a hotfix for schema update v11.0.3
#732 opened Oct 17, 2024 by shreddd
@shreddd
1
Core functionality of /data_objects/study/{study_id} endpoint is not being tested bug Something isn't working X SMALL Less than 1 day
#725 opened Oct 9, 2024 by eecavanna
Refactor /nmdcschema/associations endpoint
#717 opened Oct 4, 2024 by PeopleMakeCulture
@PeopleMakeCulture
3
Migrations: Move migration notebooks out of the demo directory cleanup 🧹 Related to cleaning up code, documentation, etc. X SMALL Less than 1 day
#712 opened Oct 2, 2024 by eecavanna
@eecavanna
submission portal to mongo ETL code creating records with empty keys bug Something isn't working
#711 opened Oct 1, 2024 by aclum
@pkalita-lbl
Document or delete top-level docs_prev directory cleanup 🧹 Related to cleaning up code, documentation, etc. documentation Improvements or additions to documentation X SMALL Less than 1 day
#710 opened Sep 29, 2024 by eecavanna
1 task
@dwinston
The alldocs collection can become stale relative to its upstream collections bug Something isn't working decision needed tag issues that need to be unblocked by decisions
#699 opened Sep 25, 2024 by eecavanna
berkeley: :param name: annotations for API endpoint are visible on Swagger UI backlog Not assigned to a sprint or not completed during a planned sprint. Needs to be reprioritized. berkeley-rollout-post-mvp-eligible does not block rolling out the MVP, still targeted for Oct cleanup 🧹 Related to cleaning up code, documentation, etc. documentation Improvements or additions to documentation X SMALL Less than 1 day
#698 opened Sep 21, 2024 by eecavanna
Dagster and referential integrity notebook generate alldocs collection in different ways
#696 opened Sep 20, 2024 by eecavanna
1
Cleanup: Move Swagger tag descriptions out of main.py and into helper file cleanup 🧹 Related to cleaning up code, documentation, etc. X SMALL Less than 1 day
#681 opened Sep 18, 2024 by eecavanna
pull biosample Identifiers from NMDC submissions to NCBI back onto nmdc mongo records
#669 opened Sep 9, 2024 by aclum
@sujaypatil96
API route: from dataobject id, return associated biosample ids enhancement New feature or request
#668 opened Sep 3, 2024 by kheal
1
@PeopleMakeCulture
API route: from biosample id, return associated dataobject ids enhancement New feature or request
#667 opened Sep 3, 2024 by kheal
Convert Swagger tag metadata (freeform blurbs) into parameter annotations cleanup 🧹 Related to cleaning up code, documentation, etc. documentation Improvements or additions to documentation
#665 opened Sep 2, 2024 by eecavanna
@eecavanna
10
Cleanup: Rename ensure_{thing} functions to ensure_{claim} cleanup 🧹 Related to cleaning up code, documentation, etc. X SMALL Less than 1 day
#663 opened Aug 31, 2024 by eecavanna
Retire the drs.microbiomedata.org subdomain (update Mongo data accordingly) backlog Not assigned to a sprint or not completed during a planned sprint. Needs to be reprioritized. cleanup 🧹 Related to cleaning up code, documentation, etc. help wanted Extra attention is needed
#652 opened Aug 25, 2024 by eecavanna
3 tasks
2
Document API endpoint parameters, so their descriptions and examples appear on Swagger UI documentation Improvements or additions to documentation enhancement New feature or request
#651 opened Aug 24, 2024 by eecavanna
2 tasks
berkeley: Update ETL code to handle projects with multiple sequencing runs berkeley-rollout-post-mvp-eligible does not block rolling out the MVP, still targeted for Oct
#647 opened Aug 23, 2024 by aclum
@sujaypatil96
3
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