Surface Masked AutoEncoders

Code available soon

Installation & Set-up

1. Connectome Workbench

Connectome Workbench is a free software for visualising neuroimaging data and can be used for visualising cortical metrics on surfaces. Downloads and instructions here.

2. Conda usage

For PyTorch and dependencies installation with conda, please follow instructions in install.md.

3. Docker usage

Coming soon

For docker support, please follow instructions in docker.md

Data

1. HCP

2. UKB

Pretraining

1. sMAE

2. vsMAE

Finetuning & Inference

References