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_modules/cellpack/autopack/Analysis.html

@@ -956,9 +956,17 @@ <h1>Source code for cellpack.autopack.Analysis</h1><div class="highlight"><pre>
 
         <span class="n">get_angles</span> <span class="o">=</span> <span class="kc">False</span>
         <span class="k">if</span> <span class="n">ingr</span><span class="o">.</span><span class="n">packing_mode</span> <span class="o">==</span> <span class="s2">&quot;gradient&quot;</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">env</span><span class="o">.</span><span class="n">use_gradient</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">center</span> <span class="o">=</span> <span class="n">center</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">env</span><span class="o">.</span><span class="n">gradients</span><span class="p">[</span><span class="n">ingr</span><span class="o">.</span><span class="n">gradient</span><span class="p">]</span><span class="o">.</span><span class="n">mode_settings</span><span class="o">.</span><span class="n">get</span><span class="p">(</span>
-                <span class="s2">&quot;center&quot;</span><span class="p">,</span> <span class="n">center</span>
-            <span class="p">)</span>
+            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ingr</span><span class="o">.</span><span class="n">gradient</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ingr</span><span class="o">.</span><span class="n">gradient</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">ingr</span><span class="o">.</span><span class="n">gradient</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">center</span> <span class="o">=</span> <span class="n">center</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="bp">self</span><span class="o">.</span><span class="n">center</span> <span class="o">=</span> <span class="n">center</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">env</span><span class="o">.</span><span class="n">gradients</span><span class="p">[</span>
+                        <span class="n">ingr</span><span class="o">.</span><span class="n">gradient</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+                    <span class="p">]</span><span class="o">.</span><span class="n">mode_settings</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;center&quot;</span><span class="p">,</span> <span class="n">center</span><span class="p">)</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">center</span> <span class="o">=</span> <span class="n">center</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">env</span><span class="o">.</span><span class="n">gradients</span><span class="p">[</span>
+                    <span class="n">ingr</span><span class="o">.</span><span class="n">gradient</span>
+                <span class="p">]</span><span class="o">.</span><span class="n">mode_settings</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;center&quot;</span><span class="p">,</span> <span class="n">center</span><span class="p">)</span>
             <span class="n">get_angles</span> <span class="o">=</span> <span class="kc">True</span>
 
         <span class="c1"># get angles wrt gradient</span>

_modules/cellpack/autopack/Environment.html

@@ -1921,7 +1921,9 @@ <h1>Source code for cellpack.autopack.Environment</h1><div class="highlight"><pr
                 <span class="c1"># get the most probable point using the gradient</span>
                 <span class="c1"># use the gradient weighted map and get mot probabl point</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">log</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;pick point from gradients </span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">,</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">allIngrPts</span><span class="p">)))</span>
-                <span class="n">ptInd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">gradients</span><span class="p">[</span><span class="n">ingr</span><span class="o">.</span><span class="n">gradient</span><span class="p">]</span><span class="o">.</span><span class="n">pickPoint</span><span class="p">(</span><span class="n">allIngrPts</span><span class="p">)</span>
+                <span class="n">ptInd</span> <span class="o">=</span> <span class="n">Gradient</span><span class="o">.</span><span class="n">pick_point_for_ingredient</span><span class="p">(</span>
+                    <span class="n">ingr</span><span class="p">,</span> <span class="n">allIngrPts</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">gradients</span>
+                <span class="p">)</span>
             <span class="k">else</span><span class="p">:</span>
                 <span class="c1"># pick a point randomly among free points</span>
                 <span class="c1"># random or uniform?</span>