Peroxisome gradient experiments: parallel packings, variable ingredient count #247
Workflow file for this run
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| name: Continuous Integration | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| # <minute [0,59]> <hour [0,23]> <day of the month [1,31]> | |
| # <month of the year [1,12]> <day of the week [0,6]> | |
| # https://pubs.opengroup.org/onlinepubs/9699919799/utilities/crontab.html#tag_20_25_07 | |
| # Run every Monday at 10:24:00 PST | |
| # (Since these CRONs are used by a lot of people - | |
| # let's be nice to the servers and schedule it _not_ on the hour) | |
| - cron: "24 18 * * 1" | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| os: [ubuntu-latest, windows-latest, macOS-latest] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[all] | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov cellpack/tests/ | |
| - name: Upload codecov | |
| uses: codecov/codecov-action@v3 | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[test] | |
| - name: Lint with flake8 | |
| run: | | |
| flake8 cellpack --count --verbose --show-source --statistics --ignore=E501,E277,W503,E203 | |
| - name: Check with black | |
| run: | | |
| black --check cellpack | |
| publish: | |
| if: success() && startsWith(github.ref, 'refs/tags/') | |
| needs: [lint, test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel | |
| - name: Build Package | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: meganrm | |
| password: ${{ secrets.PYPI_TOKEN }} |