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Version 1.2.2!
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@meren meren released this 26 Nov 19:19
· 17846 commits to master since this release
v1.2.2
63b80bd

This release

After this release the anvi'o master repository will carry on with the 2.* versions, which has fundamental differences from the current implementation at how genes are identified and processed, and version 1.* will be kept in a separate branch. Details about 2.* will be on the blog in the near future, but here we are with 1.2.2! Please don't forget to update your installations, because among many small fixes, with this version we have,

  • An anvi-refine that works with single profiles as well (#227).
  • A new flag for anvi-summary, --quick-summary, which generates a quicker summary just to see an update of bins during the refinement of large collections (a538187).
  • Also, positions of samples do not change in the interface as a group when sample ordering is changed from the Samples tab (fdd8439).
  • Plus, due to continuous requests, newly created bins now have random color assignments again (e572818).

Anvi'o and pangenomes

In case you missed it, we recently published a blog post on how to visualize pangenomes using anvi'o. This release also includes a key script for that workflow, anvi-script-itep-to-data-txt, if you decide to use ITEP to generate your protein clusters. Here is a screenshot of anvi'o's take from a simple pangenome:

image

Thanks for your interest!

Please don't install the new version using the archive files below. Instead, try one of these:

Installing from source | Installing via PyPi | OS X installer | Docker image

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