`PhononMaker` add options to `calculate_pdos` and save force constant… #5021

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Run time

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Job	Run time
lint	41s
test-non-ase (3.10, 1)	8m 40s
docs	12m 26s
test-non-ase (3.10, 2)	10m 48s
test-notebooks-and-ase (3.10)	3m 16s
test-non-ase (3.10, 3)	10m 55s
test-notebooks-and-ase (3.11)	2m 54s
test-non-ase (3.11, 1)	8m 30s
test-non-ase (3.11, 2)	10m 7s
test-notebooks-and-ase (3.12)	2m 13s
test-non-ase (3.11, 3)	10m 7s
test-non-ase (3.12, 1)	9m 9s
test-non-ase (3.12, 2)	11m 2s
test-non-ase (3.12, 3)	11m 18s
automerge	2s
	1h 52m 8s