updated tests

malonge · May 18, 2021 · dbed8e7 · dbed8e7
1 parent 1d9421e
commit dbed8e7
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/ragtag_merge.py b/ragtag_merge.py
@@ -423,6 +423,8 @@ def main():
     ]
     run_oae(cmd, output_path + file_prefix + ".fasta", merge_log)
 
+    log("INFO", "Goodbye")
+
 
 if __name__ == "__main__":
     main()
diff --git a/tests/integration_tests/scripts/validate_agp_eq.sh b/tests/integration_tests/scripts/validate_agp_eq.sh
@@ -26,12 +26,12 @@ AGP1=$2
 AGP2=$3
 
 # Prep the objects for the first AGP file
-ragtag.py agp2fasta $AGP1 $ASM > 1.fasta
+ragtag.py agp2fa $AGP1 $ASM > 1.fasta
 python3 scripts/choose_strand.py 1.fasta > 1.s.fasta
 grep -v ">"  1.s.fasta | sort > 1.seq
 
 # Prep the objects for the second AGP file
-ragtag.py agp2fasta $AGP2 $ASM > 2.fasta
+ragtag.py agp2fa $AGP2 $ASM > 2.fasta
 python3 scripts/choose_strand.py 2.fasta > 2.s.fasta
 grep -v ">"  2.s.fasta | sort > 2.seq