change inflation to 12

macmanes-lab · Apr 22, 2021 · 06b79c8 · 06b79c8
1 parent ed8881a
commit 06b79c8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/oyster.mk b/oyster.mk
@@ -292,7 +292,7 @@ ${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.spades55.fasta.short.fasta ${DIR}/o
 
 ${DIR}/orthofuse/${RUNOUT}/orthofuser.done:${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.spades55.fasta.short.fasta ${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.spades75.fasta.short.fasta ${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.transabyss.fasta.short.fasta ${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.trinity.Trinity.fasta.short.fasta
 	source activate orp;\
-	${MAKEDIR}/software/OrthoFinder/orthofinder -d -I 4 -f ${DIR}/orthofuse/${RUNOUT}/working/ -og -t $(CPU) -a $(CPU)
+	${MAKEDIR}/software/OrthoFinder/orthofinder -d -I 12 -f ${DIR}/orthofuse/${RUNOUT}/working/ -og -t $(CPU) -a $(CPU)
 	touch ${DIR}/orthofuse/${RUNOUT}/orthofuser.done
 
 ${DIR}/orthofuse/${RUNOUT}/merged.fasta:${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.spades55.fasta.short.fasta ${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.spades75.fasta.short.fasta ${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.transabyss.fasta.short.fasta ${DIR}/orthofuse/${RUNOUT}/working/${RUNOUT}.trinity.Trinity.fasta.short.fasta