SAP-11534 : improve clnghvs handling by fallback to MeasureSet.name

macarthur-lab · Nov 1, 2019 · 60b0e7f · 60b0e7f
1 parent 89d3d28
commit 60b0e7f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/parse_clinvar_xml.py b/src/parse_clinvar_xml.py
@@ -313,7 +313,7 @@ def parse_clinvar_tree(handle, dest=sys.stdout, multi=None, verbose=True, genome
                 # find hgvs_c
                 if (attribute_type == 'HGVS, coding, RefSeq' and "c." in attribute_value):
                     current_row['clnhgvs'] = attribute_value
-                else:
+                elif "c." in var_name:
                     current_row['clnhgvs'] = var_name
 
                 # find hgvs_p