Skip to content

Commit

Permalink
Built site for gh-pages
Browse files Browse the repository at this point in the history
  • Loading branch information
Quarto GHA Workflow Runner committed Aug 22, 2024
1 parent 1bad9f1 commit 0604264
Show file tree
Hide file tree
Showing 10 changed files with 53 additions and 53 deletions.
2 changes: 1 addition & 1 deletion .nojekyll
Original file line number Diff line number Diff line change
@@ -1 +1 @@
070563c4
2dad48d3
Binary file added images/logos/carpentries.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added images/logos/hex_shiny.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added images/logos/hex_tidyverse.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
6 changes: 3 additions & 3 deletions search.json
Original file line number Diff line number Diff line change
Expand Up @@ -487,7 +487,7 @@
"href": "tutorials.html",
"title": "Other Tutorials",
"section": "",
"text": "Some of the content that we produce is not as detailed as our full workshops but has a wider scope than the content included in our Coding Tips suggestions. This information can broadly be defined as “tutorials” though their depth and scope can vary significantly depending on the topic being tutorialized. As with our Coding Tips, this page is under constant development so please post an issue if you have an idea for a tutorial that you’d like to suggest that we create."
"text": "Some of the content that we produce is not as detailed as our full workshops but has a wider scope than the content included in our Coding Tips suggestions. This information can broadly be defined as “tutorials” though their depth and scope can vary significantly depending on the topic being tutorialized. As with our code tips, this page is under constant development so please post an issue if you have an idea for a tutorial that you’d like to suggest that we create."
},
{
"objectID": "tutorials.html#storing-user-specific-information",
Expand Down Expand Up @@ -619,8 +619,8 @@
"objectID": "workshops.html#coding-in-the-tidyverse",
"href": "workshops.html#coding-in-the-tidyverse",
"title": "Workshops",
"section": "Coding in the tidyverse",
"text": "Coding in the tidyverse\n\nWorkshop Website\n\nFor teams that code using the R programming language, the most familiar tools are often part of “base R” meaning that those functions and packages come pre-loaded when R is installed. Relatively recently the tidyverse has emerged as a comprehensive suite of packages that can complement base R or serve as an alternative for some tasks. This includes packages like dplyr and tidyr as well as the perhaps infamous pipe operator (%>%) among many other tools. This workshop is aimed at helping participants use the tidyverse equivalents of fundamental data wrangling tasks that learners may be used to performing with base R.\nThe GitHub repository for the workshop can be found here."
"section": "Coding in the Tidyverse",
"text": "Coding in the Tidyverse\n\nWorkshop Website\n\nFor teams that code using the R programming language, the most familiar tools are often part of “base R” meaning that those functions and packages come pre-loaded when R is installed. Relatively recently the Tidyverse has emerged as a comprehensive suite of packages that can complement base R or serve as an alternative for some tasks. This includes packages like dplyr and tidyr as well as the perhaps infamous pipe operator (%>%) among many other tools. This workshop is aimed at helping participants use the Tidyverse equivalents of fundamental data wrangling tasks that learners may be used to performing with base R.\nThe GitHub repository for the workshop can be found here."
},
{
"objectID": "workshops.html#r-shiny-apps-for-sharing-science",
Expand Down
64 changes: 32 additions & 32 deletions sitemap.xml
Original file line number Diff line number Diff line change
Expand Up @@ -2,130 +2,130 @@
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
<url>
<loc>https://lter.github.io/scicomp/tutorial-scaffold_quarto-website.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/internal_team-onboard.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/index.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/staff.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/tutorial_server.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/tutorial_json.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/googledrive-auth.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/github-website-deploy.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/github-create.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/quarto-website_add-content.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/data-acquisition.html</loc>
<lastmod>2024-08-22T19:16:46.922Z</lastmod>
<lastmod>2024-08-22T19:28:00.462Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/wg_tools.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/best_practices.html</loc>
<lastmod>2024-08-22T19:16:46.922Z</lastmod>
<lastmod>2024-08-22T19:28:00.462Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/pages_deprecated/wg_sci-comp-def.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_best-practices/pkg-loading.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_best-practices/markdown-vs-script.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_best-practices/file-paths.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_best-practices/naming-conventions.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/pages_deprecated/wg_infrastructure.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/internal_deploy-shiny.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/tutorial-scaffold_googledrive-auth.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/wg_services.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/wg_facilitation.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/googledrive-fxns.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/quarto-website_new-proj.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/github-connect.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/modules_tutorials/quarto-website_deploy-prep.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/tutorials.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/portfolio.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/wg_team-coding.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/workshops.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.654Z</lastmod>
</url>
<url>
<loc>https://lter.github.io/scicomp/internal_new-wg-setup.html</loc>
<lastmod>2024-08-22T19:16:47.118Z</lastmod>
<lastmod>2024-08-22T19:28:00.650Z</lastmod>
</url>
</urlset>
2 changes: 1 addition & 1 deletion tutorial-scaffold_googledrive-auth.html
Original file line number Diff line number Diff line change
Expand Up @@ -319,7 +319,7 @@ <h3 class="anchored" data-anchor-id="problems-with-authorization">Problems with
<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a> <span class="at">use_oob =</span> gargle<span class="sc">::</span><span class="fu">gargle_oob_default</span>(),</span>
<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a> <span class="at">token =</span> <span class="cn">NULL</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<p>Unfortunately, to use the <code>googledrive</code> package you <em>must</em> check the box that empowers the package to function as designed. If you’re uncomfortable giving the <code>googledrive</code> that much power you will need to pivot your workflow away from using GoogleDrive directly. However, NCEAS does offer access to an <a href="https://nceas.github.io/scicomp-workshop-collaborative-coding/server.html">internal server called “Aurora”</a> where data can be securely saved and shared among group members without special authentication like what <code>googledrive</code> requires. Reach out to our team if this seems like a more attractive option for your working group and we can offer training on how to use this powerful tool!</p>
<p>Unfortunately, to use the <code>googledrive</code> package you <em>must</em> check the box that empowers the package to function as designed. If you’re uncomfortable giving the <code>googledrive</code> that much power you will need to pivot your workflow away from using GoogleDrive directly. However, NCEAS does offer access to an <a href="https://lter.github.io/workshop-github/server.html">internal server called “Aurora”</a> where data can be securely saved and shared among group members without special authentication like what <code>googledrive</code> requires. Reach out to our team if this seems like a more attractive option for your working group and we can offer training on how to use this powerful tool!</p>
</section>
<section id="find-and-download-files" class="level3">
<h3 class="anchored" data-anchor-id="find-and-download-files">Find and Download Files</h3>
Expand Down
2 changes: 1 addition & 1 deletion tutorial-scaffold_quarto-website.html
Original file line number Diff line number Diff line change
Expand Up @@ -252,7 +252,7 @@ <h2 id="toc-title">On this page</h2>
<h3 class="anchored" data-anchor-id="prerequisites">Prerequisites</h3>
<p>To follow along with this tutorial you will need to take the following steps:</p>
<ul>
<li>Do all of the <a href="https://nceas.github.io/scicomp-workshop-collaborative-coding/#workshop-preparation">pre-workshop steps</a> relevant to our “Collaborative Coding with GitHub” workshop</li>
<li>Do all of the <a href="https://lter.github.io/workshop-github/#workshop-preparation">pre-workshop steps</a> relevant to our “Collaborative Coding with GitHub” workshop</li>
<li><a href="https://quarto.org/docs/get-started/">Download Quarto</a></li>
</ul>
<p>Feel free to skip any steps that you have already completed!</p>
Expand Down
6 changes: 3 additions & 3 deletions tutorials.html
Original file line number Diff line number Diff line change
Expand Up @@ -283,7 +283,7 @@ <h1 class="title">Other Tutorials</h1>
</header>


<p>Some of the content that we produce is not as detailed as our full workshops but has a wider scope than the content included in our <a href="https://nceas.github.io/scicomp.github.io/best_practices.html">Coding Tips</a> suggestions. This information can broadly be defined as “tutorials” though their depth and scope can vary significantly depending on the topic being tutorialized. As with our <a href="https://nceas.github.io/scicomp.github.io/best_practices.html">Coding Tips</a>, this page is under constant development so please <a href="https://github.com/NCEAS/scicomp.github.io/issues">post an issue</a> if you have an idea for a tutorial that you’d like to suggest that we create.</p>
<p>Some of the content that we produce is not as detailed as our full workshops but has a wider scope than the content included in our <a href="https://lter.github.io/scicomp/best_practices.html">Coding Tips</a> suggestions. This information can broadly be defined as “tutorials” though their depth and scope can vary significantly depending on the topic being tutorialized. As with our code tips, this page is under constant development so please <a href="https://github.com/lter/scicomp/issues">post an issue</a> if you have an idea for a tutorial that you’d like to suggest that we create.</p>
<section id="storing-user-specific-information" class="level2">
<h2 class="anchored" data-anchor-id="storing-user-specific-information">Storing User-Specific Information</h2>
<p>Working groups sometimes need to handle user-specific information in their code. For example, if your group stores your data in the cloud (e.g., in Box, in Dropbox, etc.) each user will have a different “absolute file path” to the synced version of the data folder on their personal computer. Similarly, groups may find it valuable to use their email address in the code. While you <em>could</em> simply have each group member add their information (file path, email, etc.) and comment out all but one of them when you work in that script, there is a better option: user-specific JSON files!</p>
Expand Down Expand Up @@ -426,7 +426,7 @@ <h3 class="anchored" data-anchor-id="problems-with-authorization">Problems with
<span id="cb5-6"><a href="#cb5-6" aria-hidden="true" tabindex="-1"></a> <span class="at">use_oob =</span> gargle<span class="sc">::</span><span class="fu">gargle_oob_default</span>(),</span>
<span id="cb5-7"><a href="#cb5-7" aria-hidden="true" tabindex="-1"></a> <span class="at">token =</span> <span class="cn">NULL</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<p>Unfortunately, to use the <code>googledrive</code> package you <em>must</em> check the box that empowers the package to function as designed. If you’re uncomfortable giving the <code>googledrive</code> that much power you will need to pivot your workflow away from using GoogleDrive directly. However, NCEAS does offer access to an <a href="https://nceas.github.io/scicomp-workshop-collaborative-coding/server.html">internal server called “Aurora”</a> where data can be securely saved and shared among group members without special authentication like what <code>googledrive</code> requires. Reach out to our team if this seems like a more attractive option for your working group and we can offer training on how to use this powerful tool!</p>
<p>Unfortunately, to use the <code>googledrive</code> package you <em>must</em> check the box that empowers the package to function as designed. If you’re uncomfortable giving the <code>googledrive</code> that much power you will need to pivot your workflow away from using GoogleDrive directly. However, NCEAS does offer access to an <a href="https://lter.github.io/workshop-github/server.html">internal server called “Aurora”</a> where data can be securely saved and shared among group members without special authentication like what <code>googledrive</code> requires. Reach out to our team if this seems like a more attractive option for your working group and we can offer training on how to use this powerful tool!</p>
</section>
<section id="find-and-download-files" class="level3">
<h3 class="anchored" data-anchor-id="find-and-download-files">Find and Download Files</h3>
Expand Down Expand Up @@ -495,7 +495,7 @@ <h2 class="anchored" data-anchor-id="building-a-website-with-quarto">Building a
<h3 class="anchored" data-anchor-id="prerequisites-2">Prerequisites</h3>
<p>To follow along with this tutorial you will need to take the following steps:</p>
<ul>
<li>Do all of the <a href="https://nceas.github.io/scicomp-workshop-collaborative-coding/#workshop-preparation">pre-workshop steps</a> relevant to our “Collaborative Coding with GitHub” workshop</li>
<li>Do all of the <a href="https://lter.github.io/workshop-github/#workshop-preparation">pre-workshop steps</a> relevant to our “Collaborative Coding with GitHub” workshop</li>
<li><a href="https://quarto.org/docs/get-started/">Download Quarto</a></li>
</ul>
<p>Feel free to skip any steps that you have already completed!</p>
Expand Down
Loading

0 comments on commit 0604264

Please sign in to comment.