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Add Pydantic v1 version of ColumnSpec.
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It should be safe to revert this commit once we require Pydantic v2.
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TallJimbo committed Dec 17, 2023
1 parent ad0cb8d commit cb26583
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Showing 2 changed files with 44 additions and 17 deletions.
10 changes: 9 additions & 1 deletion python/lsst/daf/butler/column_spec.py
Original file line number Diff line number Diff line change
Expand Up @@ -50,10 +50,11 @@
from lsst.sphgeom import Region

from . import arrow_utils, ddl
from ._compat import _BaseModelCompat
from ._timespan import Timespan


class ColumnSpec(pydantic.BaseModel, ABC):
class ColumnSpec(_BaseModelCompat, ABC):
"""Base class for descriptions of table columns."""

name: str = pydantic.Field(description="""Name of the column.""")
Expand Down Expand Up @@ -183,6 +184,7 @@ class IntColumnSpec(ColumnSpec):

def to_arrow(self) -> arrow_utils.ToArrow:
# Docstring inherited.
assert self.nullable is not None, "nullable=None should be resolved by validators"
return arrow_utils.ToArrow.for_primitive(self.name, pa.uint64(), nullable=self.nullable)


Expand All @@ -203,6 +205,7 @@ def to_sql_spec(self, **kwargs: Any) -> ddl.FieldSpec:

def to_arrow(self) -> arrow_utils.ToArrow:
# Docstring inherited.
assert self.nullable is not None, "nullable=None should be resolved by validators"
return arrow_utils.ToArrow.for_primitive(self.name, pa.string(), nullable=self.nullable)


Expand All @@ -223,6 +226,7 @@ def to_sql_spec(self, **kwargs: Any) -> ddl.FieldSpec:

def to_arrow(self) -> arrow_utils.ToArrow:
# Docstring inherited.
assert self.nullable is not None, "nullable=None should be resolved by validators"
return arrow_utils.ToArrow.for_primitive(
self.name,
# The size for Arrow binary columns is a fixed size, not a maximum
Expand All @@ -242,6 +246,7 @@ class FloatColumnSpec(ColumnSpec):

def to_arrow(self) -> arrow_utils.ToArrow:
# Docstring inherited.
assert self.nullable is not None, "nullable=None should be resolved by validators"
return arrow_utils.ToArrow.for_primitive(self.name, pa.float64(), nullable=self.nullable)


Expand All @@ -255,6 +260,7 @@ class BoolColumnSpec(ColumnSpec):

def to_arrow(self) -> arrow_utils.ToArrow:
# Docstring inherited.
assert self.nullable is not None, "nullable=None should be resolved by validators"
return arrow_utils.ToArrow.for_primitive(self.name, pa.bool_(), nullable=self.nullable)

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Expand All @@ -273,6 +279,7 @@ class RegionColumnSpec(ColumnSpec):

def to_arrow(self) -> arrow_utils.ToArrow:
# Docstring inherited.
assert self.nullable is not None, "nullable=None should be resolved by validators"
return arrow_utils.ToArrow.for_region(self.name, nullable=self.nullable)


Expand All @@ -288,6 +295,7 @@ class TimespanColumnSpec(ColumnSpec):

def to_arrow(self) -> arrow_utils.ToArrow:
# Docstring inherited.
assert self.nullable is not None, "nullable=None should be resolved by validators"
return arrow_utils.ToArrow.for_timespan(self.name, nullable=self.nullable)


Expand Down
51 changes: 35 additions & 16 deletions python/lsst/daf/butler/dimensions/_config.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,6 +36,7 @@
import pydantic
from lsst.resources import ResourcePath, ResourcePathExpression

from .._compat import PYDANTIC_V2
from .._config import Config, ConfigSubset
from .._topology import TopologicalSpace
from ..column_spec import default_nullable, not_nullable
Expand All @@ -53,13 +54,20 @@
# have a version.
_DEFAULT_NAMESPACE = "daf_butler"

if PYDANTIC_V2:
AnnotatedKeyColumnSpec: TypeAlias = Annotated[
KeyColumnSpec, pydantic.Field(discriminator="type"), pydantic.AfterValidator(not_nullable)
]
AnnotatedMetadataColumnSpec: TypeAlias = Annotated[
MetadataColumnSpec, pydantic.Field(discriminator="type"), pydantic.AfterValidator(default_nullable)
]
else:

AnnotatedKeyColumnSpec: TypeAlias = Annotated[
KeyColumnSpec, pydantic.Field(discriminator="type"), pydantic.AfterValidator(not_nullable)
]
AnnotatedMetadataColumnSpec: TypeAlias = Annotated[
MetadataColumnSpec, pydantic.Field(discriminator="type"), pydantic.AfterValidator(default_nullable)
]
class _KeyColumnModel(pydantic.BaseModel):
spec: KeyColumnSpec = pydantic.Field(discriminator="type")

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class _MetadataColumnModel(pydantic.BaseModel):
spec: MetadataColumnSpec = pydantic.Field(discriminator="type")

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class DimensionConfig(ConfigSubset):
Expand Down Expand Up @@ -202,17 +210,28 @@ def _extractElementVisitors(self) -> Iterator[DimensionConstructionVisitor]:
`StandardDimensionCombination` to an under-construction
`DimensionUniverse`.
"""
# MyPy is confused by the typing.Annotated usage and/or how Pydantic
# annotated TypeAdapter.
key_adapter: pydantic.TypeAdapter[KeyColumnSpec] = pydantic.TypeAdapter(
AnnotatedKeyColumnSpec # type: ignore
)
metadata_adapter: pydantic.TypeAdapter[MetadataColumnSpec] = pydantic.TypeAdapter(
AnnotatedMetadataColumnSpec # type: ignore
)
if PYDANTIC_V2:
# MyPy is confused by the typing.Annotated usage and/or how
# Pydantic annotated TypeAdapter.
key_adapter: pydantic.TypeAdapter[KeyColumnSpec] = pydantic.TypeAdapter( # type: ignore
AnnotatedKeyColumnSpec # type: ignore
)
validate_key = key_adapter.validate_python
metadata_adapter: pydantic.TypeAdapter[MetadataColumnSpec] = pydantic.TypeAdapter( # type: ignore
AnnotatedMetadataColumnSpec # type: ignore
)
validate_metadata = metadata_adapter.validate_python
else:

def validate_key(value: Any) -> KeyColumnSpec: # type: ignore[misc]
return not_nullable(_KeyColumnModel(spec=value).spec) # type: ignore[return-value]

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def validate_metadata(value: Any) -> MetadataColumnSpec: # type: ignore[misc]
return default_nullable(_MetadataColumnModel(spec=value).spec) # type: ignore[return-value]

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for name, subconfig in self["elements"].items():
metadata_columns = [metadata_adapter.validate_python(c) for c in subconfig.get("metadata", ())]
unique_keys = [key_adapter.validate_python(c) for c in subconfig.get("keys", ())]
metadata_columns = [validate_metadata(c) for c in subconfig.get("metadata", ())]
unique_keys = [validate_key(c) for c in subconfig.get("keys", ())]
if subconfig.get("governor", False):
unsupported = {"required", "implied", "viewOf", "alwaysJoin"}
if not unsupported.isdisjoint(subconfig.keys()):
Expand Down

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