Scripts and pipelines used for the analysis of 'Comparative genomic profiling identifies targetable brain metastasis drivers in non-small cell lung cancer'
In the folder preprocessing you can find all the snakefiles used to preprocess all data (demultiplexing, alignment, sorting, etc.). Simply edit the config file with the required paths to run the preprocessing. Due to patient confidentiality, raw fastq files are not included.
All the processed data (copy number profiles, filtered mutations, etc.) are available in the analysis directory under data.
In the folder analysis you can find all data required to regenerate all the plots used in this manuscript. You can also find an Rmarkdown file that can be run with this data to generate the plots. The plots are also already available in the plots subdirectory.
Any questions can be emailed to [email protected]