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convert config to yaml
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laszewsk committed Jul 24, 2023
1 parent af78b17 commit b600bb0
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49 changes: 49 additions & 0 deletions benchmarks/uno/target/rivanna/uno_fom_model.yaml
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Global_Params:
train_sources:
- 'GDSC'
test_sources:
- 'train'
cell_types: None
cell_features:
- 'rnaseq'
drug_features:
- 'descriptors', 'fingerprints'
dense:
- 1000
- 1000
- 1000
dense_feature_layers:
- 1000
- 1000
- 1000
activation: 'relu'
loss: 'mse'
optimizer: 'adam'
scaling: 'std'
dropout: 0
epochs: 50
batch_size: 512
val_split: 0.2
cv: 1
max_val_loss: 1.0
learning_rate: None
base_lr: None
residual: False
reduce_lr: False
warmup_lr: False
batch_normalization: False
feature_subsample: 0
rng_seed: 2018
save_path: 'save/uno'
no_gen: False
verbose : False
use_landmark_genes: True
preprocess_rnaseq: 'source_scale'
no_feature_source: True
no_response_source: True
single: True
gpus:
- 0

Monitor_Params:
timeout: -1

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