📝 Add data loader examples to cellxgene guide #696
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| repository_dispatch: | |
| types: [build] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_EVENT_NAME: ${{ github.event_name }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11"] | |
| group: | |
| - "validator" | |
| timeout-minutes: 20 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: cache pre-commit | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: Cache postgres | |
| id: cache-postgres | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/postgres.tar | |
| key: cache-postgres-0 | |
| - uses: aws-actions/configure-aws-credentials@v2 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: eu-central-1 | |
| - name: Cache postgres miss | |
| if: steps.cache-postgres.outputs.cache-hit != 'true' | |
| run: docker pull postgres:latest && docker image save postgres:latest --output ~/postgres.tar | |
| - name: Cache postgres use | |
| if: steps.cache-postgres.outputs.cache-hit == 'true' | |
| run: docker image load --input ~/postgres.tar | |
| - run: | | |
| pip install "laminci@git+https://x-access-token:${{ secrets.LAMIN_BUILD_DOCS }}@github.com/laminlabs/laminci" | |
| sudo apt-get -y install graphviz | |
| - run: nox -s lint | |
| if: ${{ matrix.python-version == '3.11' && matrix.group == 'validator' }} | |
| - run: nox -s "install(group='${{ matrix.group }}')" | |
| - run: nox -s "build(group='${{ matrix.group }}')" | |
| - name: upload docs | |
| if: ${{ matrix.group == 'census' || matrix.group == 'validator' }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docs_${{ matrix.group }} | |
| path: docs_${{ matrix.group }} | |
| docs: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: checkout lndocs | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: laminlabs/lndocs | |
| ssh-key: ${{ secrets.READ_LNDOCS }} | |
| path: lndocs | |
| ref: main | |
| - uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - run: pip install "laminci@git+https://x-access-token:${{ secrets.LAMIN_BUILD_DOCS }}@github.com/laminlabs/laminci" | |
| - run: nox -s "install(group='docs')" | |
| - uses: actions/download-artifact@v4 | |
| - run: nox -s docs | |
| - uses: nwtgck/[email protected] | |
| with: | |
| publish-dir: "_build/html" | |
| production-deploy: ${{ github.event_name == 'push' }} | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| enable-commit-comment: false | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} | |
| notify: | |
| if: always() | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: voxmedia/github-action-slack-notify-build@v1 | |
| if: ${{ needs.test.result == 'success' && github.event_name == 'repository_dispatch' }} | |
| env: | |
| SLACK_BOT_TOKEN: ${{ secrets.SLACK_GITHUB_ACTION }} | |
| with: | |
| channel_id: C05FDBBFJ1F | |
| status: SUCCESS | |
| color: good | |
| - uses: voxmedia/github-action-slack-notify-build@v1 | |
| if: ${{ needs.test.result == 'failure' && github.event_name == 'repository_dispatch' }} | |
| env: | |
| SLACK_BOT_TOKEN: ${{ secrets.SLACK_GITHUB_ACTION }} | |
| with: | |
| channel_id: C05FDBBFJ1F | |
| status: FAILURE | |
| color: danger |