Merge pull request datajoint#170 from ttngu207/modular_clustering

Pull from `main`

.github/workflows/release.yaml

@@ -0,0 +1,27 @@
+name: Release
+on:
+  workflow_dispatch:
+jobs:
+  make_github_release:
+    uses: datajoint/.github/.github/workflows/make_github_release.yaml@main
+  pypi_release:
+    needs: make_github_release
+    uses: datajoint/.github/.github/workflows/pypi_release.yaml@main
+    secrets:
+      TWINE_USERNAME: ${{secrets.TWINE_USERNAME}}
+      TWINE_PASSWORD: ${{secrets.TWINE_PASSWORD}}
+    with:
+      UPLOAD_URL: ${{needs.make_github_release.outputs.release_upload_url}}
+  mkdocs_release:
+    uses: datajoint/.github/.github/workflows/mkdocs_release.yaml@main
+    permissions: 
+      contents: write
+  # devcontainer-build:
+  #   uses: datajoint/.github/.github/workflows/devcontainer-build.yaml@main
+  # devcontainer-publish:
+  #   needs: 
+  #     - devcontainer-build
+  #   uses: datajoint/.github/.github/workflows/devcontainer-publish.yaml@main
+  #   secrets:
+  #     DOCKERHUB_USERNAME: ${{secrets.DOCKERHUB_USERNAME}}
+  #     DOCKERHUB_TOKEN: ${{secrets.DOCKERHUB_TOKEN_FOR_ELEMENTS}}

.github/workflows/test.yaml

@@ -0,0 +1,34 @@
+name: Test
+on:
+  push:
+  pull_request:
+  workflow_dispatch:
+jobs:
+  # devcontainer-build:
+  #   uses: datajoint/.github/.github/workflows/devcontainer-build.yaml@main
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        py_ver: ["3.9", "3.10"]
+        mysql_ver: ["8.0", "5.7"]
+        include:
+          - py_ver: "3.8"
+            mysql_ver: "5.7"
+          - py_ver: "3.7"
+            mysql_ver: "5.7"
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{matrix.py_ver}}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{matrix.py_ver}}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install flake8 "black[jupyter]"
+      - name: Run style tests
+        run: |
+          python_version=${{matrix.py_ver}}
+          black element_array_ephys --check --verbose --target-version py${python_version//.}
+

CHANGELOG.md

@@ -3,6 +3,42 @@
 Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
  [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
 
+## [0.2.11] - 2023-06-29
+
++ Update - Improve kilosort triggering routine - better logging, remove temporary files, robust resumable processing
++ Add - Null value for `package_version` to patch bug
++ Update - GitHub Actions workflows
++ Update - README instructions
+
+## [0.2.10] - 2023-05-26
+
++ Add - Kilosort, NWB, and DANDI citations
++ Fix - CSS to improve readability of tables in dark mode
++ Update - mkdocs.yaml
+
+## [0.2.9] - 2023-05-11
+
++ Fix - `.ipynb` dark mode output for all notebooks.
+
+## [0.2.8] - 2023-04-28
+
++ Fix - `.ipynb` output in tutorials is not visible in dark mode.
+
+## [0.2.7] - 2023-04-19
+
++ Bugfix - A name remapping dictionary was added to ensure consistency between the column names of the `metrics.csv` file and the attribute names of the `QualityMetrics` table
+
+## [0.2.6] - 2023-04-17
+
++ Fix - Update Pandas DataFrame column name to insert `pt_ratio` in `QualityMetrics.Waveform` table
+
+## [0.2.5] - 2023-04-12
+
++ Add - docstrings for quality metric tables
++ Fix - docstring errors
++ Update - `concepts.md`
++ Update - schema diagrams with quality metrics tables
+
 ## [0.2.4] - 2023-03-10
 
 + Update - Requirements with `ipywidgets` and `scikit-image` for plotting widget
@@ -90,6 +126,12 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
 + Add - Probe table supporting: Neuropixels probes 1.0 - 3A, 1.0 - 3B, 2.0 - SS,
   2.0 - MS
 
+[0.2.10]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.10
+[0.2.9]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.9
+[0.2.8]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.8
+[0.2.7]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.7
+[0.2.6]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.6
+[0.2.5]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.5
 [0.2.4]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.4
 [0.2.3]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.3
 [0.2.2]: https://github.com/datajoint/element-array-ephys/releases/tag/0.2.2