Changes

#293: Fix: When mapping single-end reads, many multimappers were previously assigned a high mapping quality. They now get assigned mapping quality zero as intended.
#321: Fix: For paired-end reads that cannot be placed as proper pairs, we now prefer placing them onto the same chrosome instead of on different ones if there is a choice.
#328: Adjust MAPQ computation for single-end reads.
#318: Added a --details option mainly intended for debugging. When used, some strobealign-specific tags are added to the SAM output that inform about things like no. of seeds found, whether mate rescue was performed etc.
#333: Fix matches ending too early in PAF output.
#359, #367: Assign (single-end and paired-end) multimappers randomly to one of the candidate mapping locations to reduce biases.
#347: Reduce memory usage by avoiding an unnecessary copy of reference contigs.

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