CRAN 1.7.0 version

NEWS.md

@@ -9,7 +9,7 @@ This may have been addressed at 64a308ba50b9119108e8946737460de5997b805b by addi
 
 
 # vcfR 1.7.0
-Released on CRAN 2018-02-XX.
+Released on CRAN 2018-02-07.
 * `vcf_field_names()` now delimts on KEY= of key/value pairs, allows commas to be used within value.
 * `read.vcfR()` will download files when provided with a link.
 * Added example data from the Variant Effect Predictor (vep) `data(vep)`.

cran-comments.md

@@ -2,11 +2,11 @@
 
 ## Test environments
 * local: ubuntu 16.04 LTS, R 3.4.3
-* local: OS X install, R 3.4.2 (binaries for OSX 3.4.3 do not appear available yet)
+* local: OS X install, R 3.4.3
 * ubuntu 14.04.5 LTS (on travis-ci), R 3.4.2
 * Windows Server 2012 R2 x64 (build 9600; on AppVeyor), R version 3.4.3 Patched (2018-02-03 r74215)
 * winbuilder: R version 3.4.3 (2017-11-30)
-* winbuilder: R Under development (unstable) (2017-09-12 r73242)
+* winbuilder: R Under development (unstable) (2018-02-01 r74194)
 
 
 ## R CMD check results
@@ -18,47 +18,47 @@ There was 1 NOTE:
 Maintainer: ‘Brian J. Knaus <[email protected]>’
 
 * checking installed package size ... NOTE
-  installed size is  8.6Mb
+  installed size is  9.5Mb
   sub-directories of 1Mb or more:
-    doc    3.0Mb
-    libs   5.7Mb
-
-
-There are 4 vignettes (HTML) which contribute to the 2.8Mb in doc.
-These could be migrated to a separate documentation package.
-This could reduce this package's size.
-Because this is a NOTE and not an ERROR or WARNING I have left it as one package for now.
+    libs   7.8Mb
 
 
 Possibly mis-spelled words in DESCRIPTION:
-  DNAbin (9:76)
-  VCF (2:33, 3:68, 4:62, 5:10, 8:58, 10:34)
-  VcfR (10:5)
-  genlight (9:66)
-  genomic (7:51)
+  DNAbin (9:46)
+  VCF (2:33, 3:68, 4:62, 5:5, 8:30, 10:5)
+  VcfR (9:55)
+  genlight (9:36)
 
 I have reviewed these words and feel they are spelled correctly.
 'DNAbin' refers to an object of class ape::DNAbin.
 'VCF' refers to the variant call format specification, a format of file handled by this package.
 'VcfR' refers to this package.
 'genlight' refers to an object of class adegenet::genlight.
-'genomic' refers to properties of a genome.
 
 
 ## Downstream dependencies
 
 I have also run R CMD check on downstream dependencies of vcfR
 All packages that I could install passed:
 
-* pcadapt: no errors or warnings
+devtools::revdep_check()
+
+Checked annovarR: 1 error  | 0 warnings | 0 notes
+Checked pcadapt : 0 errors | 0 warnings | 3 notes
 
+The ERROR from annovarR is below, I do not feel this is related to vcfR.
+
+ERROR: dependencies ‘RMySQL’, ‘AnnotationDbi’ are not available for package ‘annovarR’
+* removing ‘/tmp/Rtmp4bz1PA/R-lib/annovarR’
 
 ## Thank you CRAN Core Team!
 
 [CRAN Repository Policy](https://cran.r-project.org/web/packages/policies.html) states that all correspondence should be with CRAN and not members of the team.
 However, I think its polite to thank those who have helped this project.
 So I've decided to start a list of thanks with the hope that these individuals may see this in the future.
 
+v1.7.0 Thank you Uwe Ligges for processing my submission!
+
 v1.6.0 Thank you Uwe Ligges for processing my submission!
 
 v1.5.0 Thank you Kurt Hornik for helping me!