Update documentation

kls2177 · Jul 18, 2023 · d263e45 · d263e45
1 parent 71c195a
commit d263e45
Show file tree

Hide file tree

Showing 63 changed files with 144 additions and 503 deletions.
diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: a45932db88a3ea9623b309a10ecb577b
+config: a6ade758a36ec51280acbe4ee629c405
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/README.html b/README.html
@@ -9,7 +9,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Climate-and-Geophysical-Data-Analysis</title>
+    <title>Climate-and-Geophysical-Data-Analysis &#8212; Climate and Geophysical Data Analysis</title>
 
 
 
@@ -150,18 +150,13 @@
         <ul class="nav bd-sidenav bd-sidenav__home-link">
             <li class="toctree-l1">
                 <a class="reference internal" href="chapters/index.html">
-                    TEST
+                    Climate and Geophysical Data Analysis
                 </a>
             </li>
         </ul>
         <p aria-level="2" class="caption" role="heading"><span class="caption-text">Week 1</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="chapters/introduction/intro.html">Introduction</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul>
-<li class="toctree-l2"><a class="reference internal" href="chapters/introduction/aboutthisbook.html">About this book</a></li>
-<li class="toctree-l2"><a class="reference internal" href="chapters/introduction/howtousethisbook.html">How to use this book</a></li>
-</ul>
-</li>
-<li class="toctree-l1 has-children"><a class="reference internal" href="chapters/Week1a/whatarestatsgoodfor.html">What are statistics good for?</a><input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-2"><i class="fa-solid fa-chevron-down"></i></label><ul>
 <li class="toctree-l2"><a class="reference internal" href="chapters/Week1a/goodpractice.html">Statistics is the grammar of science…</a></li>
 <li class="toctree-l2"><a class="reference internal" href="chapters/Week1a/pitfalls.html">Lies, damned lies and statistics…</a></li>
 </ul>

diff --git a/_sources/chapters/index.md b/_sources/chapters/index.md
@@ -1,8 +1,4 @@
----
-title: Climate and Geophysical Data Analysis
----
-
-# TEST
+# Climate and Geophysical Data Analysis
 =====================================
 
 ***A course in statistical data analysis for climate science and geophysics.***

diff --git a/chapters/Week1a/goodpractice.html b/chapters/Week1a/goodpractice.html
@@ -9,7 +9,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Statistics is the grammar of science…</title>
+    <title>Statistics is the grammar of science… &#8212; Climate and Geophysical Data Analysis</title>
 
 
 
@@ -65,7 +65,7 @@
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Lies, damned lies and statistics…" href="pitfalls.html" />
-    <link rel="prev" title="What are statistics good for?" href="whatarestatsgoodfor.html" />
+    <link rel="prev" title="Introduction" href="../introduction/intro.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="None"/>
   </head>
@@ -152,18 +152,13 @@
         <ul class="nav bd-sidenav bd-sidenav__home-link">
             <li class="toctree-l1">
                 <a class="reference internal" href="../index.html">
-                    TEST
+                    Climate and Geophysical Data Analysis
                 </a>
             </li>
         </ul>
         <p aria-level="2" class="caption" role="heading"><span class="caption-text">Week 1</span></p>
 <ul class="current nav bd-sidenav">
-<li class="toctree-l1 has-children"><a class="reference internal" href="../introduction/intro.html">Introduction</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/aboutthisbook.html">About this book</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/howtousethisbook.html">How to use this book</a></li>
-</ul>
-</li>
-<li class="toctree-l1 current active has-children"><a class="reference internal" href="whatarestatsgoodfor.html">What are statistics good for?</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-2"><i class="fa-solid fa-chevron-down"></i></label><ul class="current">
+<li class="toctree-l1 current active has-children"><a class="reference internal" href="../introduction/intro.html">Introduction</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul class="current">
 <li class="toctree-l2 current active"><a class="current reference internal" href="#">Statistics is the grammar of science…</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pitfalls.html">Lies, damned lies and statistics…</a></li>
 </ul>
@@ -401,12 +396,12 @@ <h2>A Few Best Practices<a class="headerlink" href="#a-few-best-practices" title
     <div class="footer-article-item"><!-- Previous / next buttons -->
 <div class="prev-next-area">
     <a class="left-prev"
-       href="whatarestatsgoodfor.html"
+       href="../introduction/intro.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">What are statistics good for?</p>
+        <p class="prev-next-title">Introduction</p>
       </div>
     </a>
     <a class="right-next"

diff --git a/chapters/Week1a/pitfalls.html b/chapters/Week1a/pitfalls.html
@@ -9,7 +9,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Lies, damned lies and statistics…</title>
+    <title>Lies, damned lies and statistics… &#8212; Climate and Geophysical Data Analysis</title>
 
 
 
@@ -151,18 +151,13 @@
         <ul class="nav bd-sidenav bd-sidenav__home-link">
             <li class="toctree-l1">
                 <a class="reference internal" href="../index.html">
-                    TEST
+                    Climate and Geophysical Data Analysis
                 </a>
             </li>
         </ul>
         <p aria-level="2" class="caption" role="heading"><span class="caption-text">Week 1</span></p>
 <ul class="current nav bd-sidenav">
-<li class="toctree-l1 has-children"><a class="reference internal" href="../introduction/intro.html">Introduction</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/aboutthisbook.html">About this book</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/howtousethisbook.html">How to use this book</a></li>
-</ul>
-</li>
-<li class="toctree-l1 current active has-children"><a class="reference internal" href="whatarestatsgoodfor.html">What are statistics good for?</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-2"><i class="fa-solid fa-chevron-down"></i></label><ul class="current">
+<li class="toctree-l1 current active has-children"><a class="reference internal" href="../introduction/intro.html">Introduction</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="goodpractice.html">Statistics is the grammar of science…</a></li>
 <li class="toctree-l2 current active"><a class="current reference internal" href="#">Lies, damned lies and statistics…</a></li>
 </ul>
@@ -365,7 +360,7 @@ <h3>Meaningless statistics<a class="headerlink" href="#meaningless-statistics" t
 <figure class="align-default" id="rainfall">
 <a class="reference internal image-reference" href="../../_images/Histograms_UTSC_rainfall.png"><img alt="../../_images/Histograms_UTSC_rainfall.png" src="../../_images/Histograms_UTSC_rainfall.png" style="width: 453.6px; height: 324.0px;" /></a>
 <figcaption>
-<p><span class="caption-number">Fig. 2 </span><span class="caption-text">Non-zero Hourly Rainfall at [UTSC Weather Station][utsc_stn]</span><a class="headerlink" href="#rainfall" title="Permalink to this image">#</a></p>
+<p><span class="caption-number">Fig. 1 </span><span class="caption-text">Non-zero Hourly Rainfall at [UTSC Weather Station][utsc_stn]</span><a class="headerlink" href="#rainfall" title="Permalink to this image">#</a></p>
 </figcaption>
 </figure>
 </section>
@@ -389,19 +384,19 @@ <h3>Data mining<a class="headerlink" href="#data-mining" title="Permalink to thi
 <figure class="align-default" id="xckd-green">
 <a class="reference internal image-reference" href="../../_images/green_jelly_beans.png"><img alt="../../_images/green_jelly_beans.png" src="../../_images/green_jelly_beans.png" style="width: 405.0px; height: 1123.5px;" /></a>
 <figcaption>
-<p><span class="caption-number">Fig. 3 </span><span class="caption-text"><a class="reference external" href="https://xkcd.com/882/">Green jelly beans linked to acne!</a></span><a class="headerlink" href="#xckd-green" title="Permalink to this image">#</a></p>
+<p><span class="caption-number">Fig. 2 </span><span class="caption-text"><a class="reference external" href="https://xkcd.com/882/">Green jelly beans linked to acne!</a></span><a class="headerlink" href="#xckd-green" title="Permalink to this image">#</a></p>
 </figcaption>
 </figure>
 </section>
 <section id="spurious-correlation">
 <h3>Spurious correlation<a class="headerlink" href="#spurious-correlation" title="Permalink to this headline">#</a></h3>
 <ul class="simple">
-<li><p>correlation does not imply causation. Interpretation must always be grounded in theory (<a class="reference internal" href="#pirates"><span class="std std-numref">Fig. 4</span></a>).</p></li>
+<li><p>correlation does not imply causation. Interpretation must always be grounded in theory (<a class="reference internal" href="#pirates"><span class="std std-numref">Fig. 3</span></a>).</p></li>
 </ul>
 <figure class="align-default" id="pirates">
 <a class="reference internal image-reference" href="../../_images/PiratesVsTemp.png"><img alt="../../_images/PiratesVsTemp.png" src="../../_images/PiratesVsTemp.png" style="width: 512.0px; height: 322.40000000000003px;" /></a>
 <figcaption>
-<p><span class="caption-number">Fig. 4 </span><span class="caption-text">Stop global warming, become a pirate! <a class="reference external" href="https://commons.wikimedia.org/wiki/File:PiratesVsTemp(en).svg">image source here</a></span><a class="headerlink" href="#pirates" title="Permalink to this image">#</a></p>
+<p><span class="caption-number">Fig. 3 </span><span class="caption-text">Stop global warming, become a pirate! <a class="reference external" href="https://commons.wikimedia.org/wiki/File:PiratesVsTemp(en).svg">image source here</a></span><a class="headerlink" href="#pirates" title="Permalink to this image">#</a></p>
 </figcaption>
 </figure>
 </section>

diff --git a/chapters/Week1a/whatarestatsgoodfor.html b/chapters/Week1a/whatarestatsgoodfor.html
@@ -9,7 +9,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>What are statistics good for?</title>
+    <title>What are statistics good for? &#8212; Climate and Geophysical Data Analysis</title>
 
 
 
@@ -64,8 +64,6 @@
     <link rel="canonical" href="https://kls2177.github.io/Climate-and-Geophysical-Data-Analysis/chapters/index.html/chapters/Week1a/whatarestatsgoodfor.html" />
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Statistics is the grammar of science…" href="goodpractice.html" />
-    <link rel="prev" title="How to use this book" href="../introduction/howtousethisbook.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="None"/>
   </head>
@@ -152,18 +150,13 @@
         <ul class="nav bd-sidenav bd-sidenav__home-link">
             <li class="toctree-l1">
                 <a class="reference internal" href="../index.html">
-                    TEST
+                    Climate and Geophysical Data Analysis
                 </a>
             </li>
         </ul>
         <p aria-level="2" class="caption" role="heading"><span class="caption-text">Week 1</span></p>
-<ul class="current nav bd-sidenav">
+<ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../introduction/intro.html">Introduction</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/aboutthisbook.html">About this book</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/howtousethisbook.html">How to use this book</a></li>
-</ul>
-</li>
-<li class="toctree-l1 current active has-children"><a class="current reference internal" href="#">What are statistics good for?</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-2"><i class="fa-solid fa-chevron-down"></i></label><ul>
 <li class="toctree-l2"><a class="reference internal" href="goodpractice.html">Statistics is the grammar of science…</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pitfalls.html">Lies, damned lies and statistics…</a></li>
 </ul>
@@ -355,24 +348,6 @@ <h1>What are statistics good for?<a class="headerlink" href="#what-are-statistic
 
     <div class="footer-article-item"><!-- Previous / next buttons -->
 <div class="prev-next-area">
-    <a class="left-prev"
-       href="../introduction/howtousethisbook.html"
-       title="previous page">
-      <i class="fa-solid fa-angle-left"></i>
-      <div class="prev-next-info">
-        <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">How to use this book</p>
-      </div>
-    </a>
-    <a class="right-next"
-       href="goodpractice.html"
-       title="next page">
-      <div class="prev-next-info">
-        <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Statistics is the grammar of science…</p>
-      </div>
-      <i class="fa-solid fa-angle-right"></i>
-    </a>
 </div></div>
 
 </div>

diff --git a/chapters/Week1b/Variance_Example.html b/chapters/Week1b/Variance_Example.html
@@ -9,7 +9,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Example: Sensitivity of Standard Deviation to Sampling</title>
+    <title>Example: Sensitivity of Standard Deviation to Sampling &#8212; Climate and Geophysical Data Analysis</title>
 
 
 
@@ -150,18 +150,13 @@
         <ul class="nav bd-sidenav bd-sidenav__home-link">
             <li class="toctree-l1">
                 <a class="reference internal" href="../index.html">
-                    TEST
+                    Climate and Geophysical Data Analysis
                 </a>
             </li>
         </ul>
         <p aria-level="2" class="caption" role="heading"><span class="caption-text">Week 1</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../introduction/intro.html">Introduction</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/aboutthisbook.html">About this book</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/howtousethisbook.html">How to use this book</a></li>
-</ul>
-</li>
-<li class="toctree-l1 has-children"><a class="reference internal" href="../Week1a/whatarestatsgoodfor.html">What are statistics good for?</a><input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-2"><i class="fa-solid fa-chevron-down"></i></label><ul>
 <li class="toctree-l2"><a class="reference internal" href="../Week1a/goodpractice.html">Statistics is the grammar of science…</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Week1a/pitfalls.html">Lies, damned lies and statistics…</a></li>
 </ul>

diff --git a/chapters/Week1b/descriptivestats.html b/chapters/Week1b/descriptivestats.html
@@ -9,7 +9,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Descriptive Statistics</title>
+    <title>Descriptive Statistics &#8212; Climate and Geophysical Data Analysis</title>
 
 
 
@@ -150,18 +150,13 @@
         <ul class="nav bd-sidenav bd-sidenav__home-link">
             <li class="toctree-l1">
                 <a class="reference internal" href="../index.html">
-                    TEST
+                    Climate and Geophysical Data Analysis
                 </a>
             </li>
         </ul>
         <p aria-level="2" class="caption" role="heading"><span class="caption-text">Week 1</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../introduction/intro.html">Introduction</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/aboutthisbook.html">About this book</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../introduction/howtousethisbook.html">How to use this book</a></li>
-</ul>
-</li>
-<li class="toctree-l1 has-children"><a class="reference internal" href="../Week1a/whatarestatsgoodfor.html">What are statistics good for?</a><input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-2"><i class="fa-solid fa-chevron-down"></i></label><ul>
 <li class="toctree-l2"><a class="reference internal" href="../Week1a/goodpractice.html">Statistics is the grammar of science…</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Week1a/pitfalls.html">Lies, damned lies and statistics…</a></li>
 </ul>