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Merge branch 'master' of https://github.com/LorenFrankLab/spyglass #141

Merge branch 'master' of https://github.com/LorenFrankLab/spyglass

Merge branch 'master' of https://github.com/LorenFrankLab/spyglass #141

Workflow file for this run

name: Test conda env and run tests
on:
push:
schedule: # once a day at midnight UTC
- cron: '0 0 * * *'
jobs:
run-tests:
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
os: [ubuntu-latest] #, macos-latest, windows-latest]
env:
OS: ${{ matrix.os }}
PYTHON: '3.8'
steps:
- name: Cancel Workflow Action
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
all_but_latest: true
- name: Checkout
uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: ${{ env.PYTHON }}
- name: Set up conda environment
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: spyglass
environment-file: environment.yml
miniforge-variant: Mambaforge
miniforge-version: latest
- name: Install spyglass
run: |
pip install -e .[test]
- name: Download data
env:
UCSF_BOX_TOKEN: ${{ secrets.UCSF_BOX_TOKEN }}
UCSF_BOX_USER: ${{ secrets.UCSF_BOX_USER }}
WEBSITE: ftps://ftp.box.com/trodes_to_nwb_test_data/minirec20230622.nwb
RAW_DIR: /home/runner/work/spyglass/spyglass/tests/_data/raw/
run: |
mkdir -p $RAW_DIR
wget --recursive --no-verbose --no-host-directories --no-directories \
--user $UCSF_BOX_USER --password $UCSF_BOX_TOKEN \
-P $RAW_DIR $WEBSITE
- name: Run tests
run: |
pytest -rP # env vars are set within certain tests