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Sync branch 142 #155

Merged
merged 74 commits into from
Apr 1, 2024
Merged

Sync branch 142 #155

merged 74 commits into from
Apr 1, 2024

Commits on Sep 18, 2023

  1. Add precommit

    @kazewong
    kazewong committed Sep 18, 2023
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  2. format without verify

    @kazewong
    kazewong committed Sep 18, 2023
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  3. update

    @kazewong
    kazewong committed Sep 18, 2023
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Commits on Feb 3, 2024

  1. added plotting utilities and refactored hyperparams

    ThibeauWouters committed Feb 3, 2024
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Commits on Feb 5, 2024

  1. fixed hyperparams

    ThibeauWouters committed Feb 5, 2024
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  2. restructured plotting functionalities

    ThibeauWouters committed Feb 5, 2024
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  3. typo

    ThibeauWouters committed Feb 5, 2024
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  4. Add Community example and fix dualmoon image

    @kazewong
    kazewong committed Feb 5, 2024
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  5. Let's use the http link actually

    @kazewong
    kazewong committed Feb 5, 2024
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  6. Merge pull request #146 from kazewong/Bayeux-example 

    Bayeux example
    @kazewong
    kazewong authored Feb 5, 2024
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Commits on Feb 6, 2024

  1. revert sampler state arg

    ThibeauWouters committed Feb 6, 2024
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  2. revert summary dict initialization code

    ThibeauWouters committed Feb 6, 2024
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  3. removed matplotlib import

    ThibeauWouters committed Feb 6, 2024
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  4. Merge branch 'main' into plotting

    @kazewong
    kazewong authored Feb 6, 2024
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Commits on Feb 13, 2024

  1. fixed global sampler failure

    Thibeau Wouters committed Feb 13, 2024
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  2. added computation for gelman-rubin R

    Thibeau Wouters committed Feb 13, 2024
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  3. typo

    Thibeau Wouters committed Feb 13, 2024
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  4. added code to track Gelman-Rubin R

    Thibeau Wouters committed Feb 13, 2024
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  5. added gelman rubin key for plotting

    Thibeau Wouters committed Feb 13, 2024
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  6. fixed test runs

    Thibeau Wouters committed Feb 13, 2024
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Commits on Feb 16, 2024

  1. Update postprocessing.py

    @kazewong
    kazewong authored Feb 16, 2024
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  2. Update Sampler.py

    @kazewong
    kazewong authored Feb 16, 2024
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  3. Merge pull request #143 from ThibeauWouters/plotting 

    Added plotting utilities and refactored hyperparams
    @kazewong
    kazewong authored Feb 16, 2024
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Commits on Feb 28, 2024

  1. small bug fix in keys for stepping optimizer

    @tedwards2412
    tedwards2412 committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. Merge pull request #148 from tedwards2412/main 

    small bug fix in keys for stepping optimizer
    @kazewong
    kazewong authored Feb 29, 2024
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Commits on Mar 22, 2024

  1. Merge branch '134-add-precommit-script-and-fix-formatting'

    @kazewong
    kazewong committed Mar 22, 2024
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  2. Merge pull request #150 from kazewong/main 

    Sync branch 134
    @kazewong
    kazewong authored Mar 22, 2024
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  3. Update type hint for rng_key in sample method

    @kazewong
    kazewong committed Mar 22, 2024
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  4. Fix type hinting in NFModel and Bijection classes

    @kazewong
    kazewong committed Mar 22, 2024
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  5. Update NFProposal class signature

    @kazewong
    kazewong committed Mar 22, 2024
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  6. Update jaxtyping import and PRNGKey type in MLP 

    class
    @kazewong
    kazewong committed Mar 22, 2024
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  7. Fix PRNGKeyArray import in code

    @kazewong
    kazewong committed Mar 22, 2024
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Commits on Mar 25, 2024

  1. Fix type annotations in common.py

    @kazewong
    kazewong committed Mar 25, 2024
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  2. Fix import statement in rqSpline.py and 

    EvolutionaryOptimizer.py
    @kazewong
    kazewong committed Mar 25, 2024
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  3. Refactor ProposalBase class initialization and 

    precompilation
    @kazewong
    kazewong committed Mar 25, 2024
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  4. Fix PRNGKeyArray import and update data dictionary

    @kazewong
    kazewong committed Mar 25, 2024
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  5. Enable just-in-time (JIT) compilation

    @kazewong
    kazewong committed Mar 25, 2024
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Commits on Mar 26, 2024

  1. Refactor sampler classes and update type 

    annotations
    @kazewong
    kazewong committed Mar 26, 2024
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  2. Update logpdf type hints in GaussianRandomWalk and 

    MALA
    @kazewong
    kazewong committed Mar 26, 2024
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  3. Add PRNGKeyArray to MALA sampler

    @kazewong
    kazewong committed Mar 26, 2024
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  4. Fix variable naming in GaussianRandomWalk class

    @kazewong
    kazewong committed Mar 26, 2024
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  5. Fix formatting and type annotations

    @kazewong
    kazewong committed Mar 26, 2024
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  6. Refactor make_training_loop function in utils.py

    @kazewong
    kazewong committed Mar 26, 2024
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  7. Add Float type hint to _data_mean and _data_cov

    @kazewong
    kazewong committed Mar 26, 2024
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  8. Fix type hints in rqSpline.py

    @kazewong
    kazewong committed Mar 26, 2024
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  9. Update version and Python requirement

    @kazewong
    kazewong committed Mar 26, 2024
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  10. Fix array shape in ProposalBase class

    @kazewong
    kazewong committed Mar 26, 2024
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  11. Fix data type in Sampler.py and update test files

    @kazewong
    kazewong committed Mar 26, 2024
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  12. Update log_posterior function to accept data as a 

    dictionary
    @kazewong
    kazewong committed Mar 26, 2024
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  13. Fix PRNGKeyArray usage in test_kernels.py and 

    test_nf.py
    @kazewong
    kazewong committed Mar 26, 2024
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  14. Merge pull request #151 from kazewong/134-add-precommit-script-and-fi… 

    …x-formatting

134 add precommit script and fix formatting
    @kazewong
    kazewong authored Mar 26, 2024
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  15. Update Python version matrix

    @kazewong
    kazewong committed Mar 26, 2024
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  16. Nuke PRNG_key

    @kazewong
    kazewong committed Mar 26, 2024
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  17. Rename hyperparameters

    @kazewong
    kazewong committed Mar 26, 2024
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  18. Sampler can initialize now

    @kazewong
    kazewong committed Mar 26, 2024
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  19. Deprecated quantile cut

    @kazewong
    kazewong committed Mar 26, 2024
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  20. Update hyperparameters and fix code formatting

    @kazewong
    kazewong committed Mar 26, 2024
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  21. Refactor HMC initialization and sampling

    @kazewong
    kazewong committed Mar 26, 2024
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  22. Refactor RWMCMC initialization and sampling

    @kazewong
    kazewong committed Mar 26, 2024
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  23. Refactor initialization and random key splitting 

    in test_flowHMC.py
    @kazewong
    kazewong committed Mar 26, 2024
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  24. Refactor local sampler tuning method

    @kazewong
    kazewong committed Mar 26, 2024
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  25. Remove PRNG_keys.py file

    @kazewong
    kazewong committed Mar 26, 2024
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  26. Fix typo in RealNVP class argument name

    @kazewong
    kazewong committed Mar 26, 2024
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  27. Fix PRNGKeyArray initialization in 

    train_normalizing_flow.py
    @kazewong
    kazewong committed Mar 26, 2024
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  28. Update target_dualmoon function to use data 

    dictionary
    @kazewong
    kazewong committed Mar 26, 2024
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  29. Fix random number generation in dualmoon.py

    @kazewong
    kazewong committed Mar 26, 2024
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  30. Fix bug in login functionality

    @kazewong
    kazewong committed Mar 26, 2024
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  31. Merge pull request #152 from kazewong/144-get-rid-of-random_key_set 

    144 get rid of random key set
    @kazewong
    kazewong authored Mar 26, 2024
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Commits on Mar 31, 2024

  1. Refactor NFModel and MaskedCouplingRQSpline 

    classes
    @kazewong
    kazewong committed Mar 31, 2024
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  2. Fix layer inversion in MaskedCouplingRQSpline

    @kazewong
    kazewong committed Mar 31, 2024
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  3. Fix type ignore in rqSpline.py

    @kazewong
    kazewong committed Mar 31, 2024
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  4. Refactor RealNVP and MaskedCouplingRQSpline 

    classes
    @kazewong
    kazewong committed Mar 31, 2024
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  5. Fix array data type in test_nf.py

    @kazewong
    kazewong committed Mar 31, 2024
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  6. Merge pull request #154 from kazewong/153-use-scan-to-reduce-nf-compi… 

    …lation-time

153 use scan to reduce nf compilation time
    @kazewong
    kazewong authored Mar 31, 2024
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