Fix for change with quotechar and delim flex in built in csvwriter (#… #1944
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| name: pyemu continuous integration | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 AM PST, 8 PM NZST) | |
| push: | |
| pull_request: | |
| jobs: | |
| pyemuCI: | |
| name: autotests | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] # , macos-latest] | |
| python-version: [3.9, "3.10", "3.11", "3.12", "3.13"] | |
| run-type: [std] | |
| test-path: ["."] | |
| include: | |
| - os: macos-latest | |
| python-version: 3.11 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 # checksout this repo | |
| - name: Set Windows ENV | |
| if: runner.os == 'Windows' | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| # Setup conda env | |
| - name: Install Conda environment using micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| environment-name: pyemu | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| cache-downloads: true | |
| cache-environment: true | |
| cache-environment-key: environment-${{ steps.date.outputs.date }} | |
| cache-downloads-key: downloads-${{ steps.date.outputs.date }} | |
| - name: Install pyemu | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| micromamba list | |
| - name: Install Modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Add executables directory to path | |
| shell: bash | |
| run: | | |
| echo "$MODFLOW_BIN_PATH" >> $GITHUB_PATH | |
| echo "$HOME/.local/bin" >> $GITHUB_PATH | |
| echo $GITHUB_PATH | |
| # order matters for this step - after setting path to executables | |
| - name: Install PEST++ suite using get-pestpp | |
| shell: bash -l {0} | |
| run: | | |
| get-pestpp :home | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.test-path }} | |
| shell: bash -l {0} | |
| working-directory: ./autotest | |
| run: | | |
| pytest -rP -rx --capture=no -v -n=auto --tb=native --cov=pyemu --cov-report=lcov ${{ matrix.test-path }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Test Notebooks | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == 3.11 }} | |
| shell: bash -l {0} | |
| working-directory: ./examples | |
| run: | | |
| micromamba install --name pyemu jupyter jupytext | |
| pytest -v -rP -rx --capture=no -n=auto --nbmake --cov=pyemu --cov-report=lcov:../autotest/coverage.lcov \ | |
| --cov-config=../autotest/.coveragerc *.ipynb | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Coveralls | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| flag-name: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.test-path }} | |
| parallel: true | |
| path-to-lcov: autotest/coverage.lcov | |
| coveralls_finish: | |
| needs: pyemuCI | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| parallel-finished: true | |
| path-to-lcov: autotest/coverage.lcov |