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Changed bed file structure to ARTICv3 #42

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merged 11 commits into from
Sep 6, 2024
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jonas-fuchs
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@jonas-fuchs jonas-fuchs commented Aug 30, 2024

NEW

  • changed bed file format to ARTICv3 to be compatible with https://github.com/quick-lab/primerschemes
  • introduced --name command line option that allows users to specify a scheme name which then appears in primer names and plots

UPDATES

  • code clean-up
  • changed versioning of requirements.txt to circumvent incompatibilities

FIXES

  • fixed BLAST reporting error for unsolvable off-target hits (variable was not defined)

@jonas-fuchs
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@wm75 @ChrisgKent could you guys have a look at this PR? I tried now to make the bed file compatible with primal-page.

@jonas-fuchs jonas-fuchs added the enhancement New feature or request label Aug 30, 2024
@jonas-fuchs jonas-fuchs linked an issue Aug 30, 2024 that may be closed by this pull request
@jonas-fuchs jonas-fuchs merged commit ac4b1ed into master Sep 6, 2024
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@jonas-fuchs jonas-fuchs deleted the primerscheme_com_output branch September 6, 2024 09:48
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add option to enforce a primerscheme compatible bed output.
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