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Update clang-format to 17 (HDFGroup#4931)
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Also bump the clang-format GitHub actions to 17
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derobins authored Oct 5, 2024
1 parent 33b28f8 commit 54f8f12
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Showing 84 changed files with 566 additions and 576 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/clang-format-check.yml
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,6 @@ jobs:
with:
source: '.'
extensions: 'c,h,cpp,hpp,java'
clangFormatVersion: 13
clangFormatVersion: 17
style: file
exclude: './config ./hl/src/H5LTanalyze.c ./hl/src/H5LTparse.c ./hl/src/H5LTparse.h ./src/H5Epubgen.h ./src/H5Einit.h ./src/H5Eterm.h ./src/H5Edefin.h ./src/H5version.h ./src/H5overflow.h'
2 changes: 1 addition & 1 deletion .github/workflows/clang-format-fix.yml
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Expand Up @@ -30,7 +30,7 @@ jobs:
with:
source: '.'
extensions: 'c,h,cpp,hpp,java'
clangFormatVersion: 13
clangFormatVersion: 17
inplace: True
style: file
exclude: './config ./hl/src/H5LTanalyze.c ./hl/src/H5LTparse.c ./hl/src/H5LTparse.h ./src/H5Epubgen.h ./src/H5Einit.h ./src/H5Eterm.h ./src/H5Edefin.h ./src/H5version.h ./src/H5overflow.h'
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2 changes: 1 addition & 1 deletion HDF5Examples/C/H5T/h5ex_t_objref.c
Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,7 @@ main(void)
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
rdata = (H5R_ref_t *)malloc(dims[0] * sizeof(H5R_ref_t));
#else
rdata = (hobj_ref_t *)malloc(dims[0] * sizeof(hobj_ref_t));
rdata = (hobj_ref_t *)malloc(dims[0] * sizeof(hobj_ref_t));
#endif
/*
* Read the data.
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2 changes: 1 addition & 1 deletion HDF5Examples/C/H5T/h5ex_t_objrefatt.c
Original file line number Diff line number Diff line change
Expand Up @@ -136,7 +136,7 @@ main(void)
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
rdata = (H5R_ref_t *)malloc(dims[0] * sizeof(H5R_ref_t));
#else
rdata = (hobj_ref_t *)malloc(dims[0] * sizeof(hobj_ref_t));
rdata = (hobj_ref_t *)malloc(dims[0] * sizeof(hobj_ref_t));
#endif
/*
* Read the data.
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2 changes: 1 addition & 1 deletion HDF5Examples/C/H5T/h5ex_t_regref.c
Original file line number Diff line number Diff line change
Expand Up @@ -154,7 +154,7 @@ main(void)
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
rdata = (H5R_ref_t *)malloc(dims[0] * sizeof(H5R_ref_t));
#else
rdata = (hdset_reg_ref_t *)malloc(dims[0] * sizeof(hdset_reg_ref_t));
rdata = (hdset_reg_ref_t *)malloc(dims[0] * sizeof(hdset_reg_ref_t));
#endif

status = H5Sclose(space);
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2 changes: 1 addition & 1 deletion HDF5Examples/C/H5T/h5ex_t_regrefatt.c
Original file line number Diff line number Diff line change
Expand Up @@ -169,7 +169,7 @@ main(void)
#if H5_VERSION_GE(1, 12, 0) && !defined(H5_USE_110_API) && !defined(H5_USE_18_API) && !defined(H5_USE_16_API)
rdata = (H5R_ref_t *)malloc(dims[0] * sizeof(H5R_ref_t));
#else
rdata = (hdset_reg_ref_t *)malloc(dims[0] * sizeof(hdset_reg_ref_t));
rdata = (hdset_reg_ref_t *)malloc(dims[0] * sizeof(hdset_reg_ref_t));
#endif

status = H5Sclose(space);
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4 changes: 2 additions & 2 deletions HDF5Examples/C/TUTR/h5_extend.c
Original file line number Diff line number Diff line change
Expand Up @@ -36,8 +36,8 @@ main(void)
herr_t status;
hsize_t chunk_dims[2] = {2, 5};
int data[3][3] = {{1, 1, 1}, /* data to write */
{1, 1, 1},
{1, 1, 1}};
{1, 1, 1},
{1, 1, 1}};

/* Variables used in extending and writing to the extended portion of dataset */
hsize_t size[2];
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4 changes: 2 additions & 2 deletions HDF5Examples/CXX/TUTR/h5tutr_extend.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -33,8 +33,8 @@ main(void)
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
hsize_t chunk_dims[2] = {2, 5};
int data[3][3] = {{1, 1, 1}, // data to write
{1, 1, 1},
{1, 1, 1}};
{1, 1, 1},
{1, 1, 1}};

// Variables used in extending and writing to the extended portion of dataset

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2 changes: 1 addition & 1 deletion HDF5Examples/JAVA/H5T/H5Ex_T_Commit.java
Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,7 @@ private static class Sensor_Datatype {

String[] memberNames = {"Serial number", "Location", "Temperature (F)", "Pressure (inHg)"};
long[] memberFileTypes = {HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE};
HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE};
static int[] memberStorage = {INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE};

// Data size is the storage size for the members not the object.
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2 changes: 1 addition & 1 deletion HDF5Examples/JAVA/H5T/H5Ex_T_Compound.java
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ static class Sensor_Datatype {

static String[] memberNames = {"Serial number", "Location", "Temperature (F)", "Pressure (inHg)"};
static long[] memberMemTypes = {HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5T_C_S1,
HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE};
HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE};
static long[] memberFileTypes = {HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE};
static int[] memberStorage = {INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE};
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2 changes: 1 addition & 1 deletion HDF5Examples/JAVA/H5T/H5Ex_T_CompoundAttribute.java
Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@ static class Sensor_Datatype {

static String[] memberNames = {"Serial number", "Location", "Temperature (F)", "Pressure (inHg)"};
static long[] memberMemTypes = {HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5T_C_S1,
HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE};
HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_NATIVE_DOUBLE};
static long[] memberFileTypes = {HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_C_S1,
HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_IEEE_F64BE};
static int[] memberStorage = {INTEGERSIZE, MAXSTRINGSIZE, DOUBLESIZE, DOUBLESIZE};
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4 changes: 2 additions & 2 deletions c++/src/H5DataType.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -91,8 +91,8 @@ DataType::DataType(const H5T_class_t type_class, size_t size)
///\exception H5::ReferenceException
//--------------------------------------------------------------------------
DataType::DataType(const H5Location &loc, const void *ref, H5R_type_t ref_type, const PropList &plist)
: H5Object(), id{H5Location::p_dereference(loc.getId(), ref, ref_type, plist,
"constructor - by dereference")},
: H5Object(),
id{H5Location::p_dereference(loc.getId(), ref, ref_type, plist, "constructor - by dereference")},
encoded_buf(NULL), buf_size(0)
{
}
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8 changes: 4 additions & 4 deletions c++/test/titerate.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -30,17 +30,17 @@ using namespace H5;
#define NDATASETS 50

/* Number of attributes for attribute iteration test */
//#define NATTR 50
// #define NATTR 50

/* Number of groups for second group iteration test */
//#define ITER_NGROUPS 150
// #define ITER_NGROUPS 150

/* General maximum length of names used */
#define NAMELEN 80

/* 1-D dataset with fixed dimensions */
//#define SPACE1_RANK 1
//#define SPACE1_DIM1 4
// #define SPACE1_RANK 1
// #define SPACE1_DIM1 4

const H5std_string FILE_ITERATE("titerate.h5");
const H5std_string GROUP1("Top Group");
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22 changes: 11 additions & 11 deletions fortran/src/H5_f.c
Original file line number Diff line number Diff line change
Expand Up @@ -569,17 +569,17 @@ h5init_flags_c(int_f *h5d_flags, size_t_f *h5d_size_flags, int_f *h5e_flags, hid
h5fd_flags[20] = (int_f)SELECT_IOC_TOTAL;
h5fd_flags[21] = (int_f)ioc_selection_options;
#else
h5fd_flags[11] = 0;
h5fd_flags[12] = 0;
h5fd_flags[13] = 0;
h5fd_flags[14] = 0;
h5fd_flags[15] = 0;
h5fd_flags[16] = 0;
h5fd_flags[17] = 0;
h5fd_flags[18] = 0;
h5fd_flags[19] = 0;
h5fd_flags[20] = 0;
h5fd_flags[21] = 0;
h5fd_flags[11] = 0;
h5fd_flags[12] = 0;
h5fd_flags[13] = 0;
h5fd_flags[14] = 0;
h5fd_flags[15] = 0;
h5fd_flags[16] = 0;
h5fd_flags[17] = 0;
h5fd_flags[18] = 0;
h5fd_flags[19] = 0;
h5fd_flags[20] = 0;
h5fd_flags[21] = 0;
#endif

/*
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2 changes: 1 addition & 1 deletion hl/examples/ex_table_03.c
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ main(void)

Particle p = {"zero", 0, 0, 0.0F, 0.0};
size_t dst_sizes[NFIELDS] = {sizeof(p.name), sizeof(p.lati), sizeof(p.longi), sizeof(p.pressure),
sizeof(p.temperature)};
sizeof(p.temperature)};

/* Define field information */
const char *field_names[NFIELDS] = {"Name", "Latitude", "Longitude", "Pressure", "Temperature"};
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2 changes: 1 addition & 1 deletion hl/examples/ex_table_04.c
Original file line number Diff line number Diff line change
Expand Up @@ -56,7 +56,7 @@ main(void)
size_t dst_offset[NFIELDS] = {HOFFSET(Particle, name), HOFFSET(Particle, lati), HOFFSET(Particle, longi),
HOFFSET(Particle, pressure), HOFFSET(Particle, temperature)};
size_t dst_sizes[NFIELDS] = {sizeof(dst_buf[0].name), sizeof(dst_buf[0].lati), sizeof(dst_buf[0].longi),
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};
size_t field_offset_pos[2] = {HOFFSET(Position, lati), HOFFSET(Position, longi)};
const char *field_names[NFIELDS] = /* Define field information */
{"Name", "Latitude", "Longitude", "Pressure", "Temperature"};
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2 changes: 1 addition & 1 deletion hl/examples/ex_table_05.c
Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ main(void)
size_t dst_offset[NFIELDS] = {HOFFSET(Particle, name), HOFFSET(Particle, lati), HOFFSET(Particle, longi),
HOFFSET(Particle, pressure), HOFFSET(Particle, temperature)};
size_t dst_sizes[NFIELDS] = {sizeof(dst_buf[0].name), sizeof(dst_buf[0].lati), sizeof(dst_buf[0].longi),
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};

size_t field_offset_pos[2] = {HOFFSET(Position, lati), HOFFSET(Position, longi)};

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2 changes: 1 addition & 1 deletion hl/examples/ex_table_08.c
Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ main(void)
size_t dst_offset[NFIELDS] = {HOFFSET(Particle, name), HOFFSET(Particle, lati), HOFFSET(Particle, longi),
HOFFSET(Particle, pressure), HOFFSET(Particle, temperature)};
size_t dst_sizes[NFIELDS] = {sizeof(p_data[0].name), sizeof(p_data[0].lati), sizeof(p_data[0].longi),
sizeof(p_data[0].pressure), sizeof(p_data[0].temperature)};
sizeof(p_data[0].pressure), sizeof(p_data[0].temperature)};

/* Define an array of Particles to insert */
Particle p_data_insert[NRECORDS_INS] = {{"new", 30, 30, 3.0F, 30.0}, {"new", 40, 40, 4.0F, 40.0}};
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2 changes: 1 addition & 1 deletion hl/examples/ex_table_09.c
Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ main(void)
size_t dst_offset[NFIELDS] = {HOFFSET(Particle, name), HOFFSET(Particle, lati), HOFFSET(Particle, longi),
HOFFSET(Particle, pressure), HOFFSET(Particle, temperature)};
size_t dst_sizes[NFIELDS] = {sizeof(dst_buf[0].name), sizeof(dst_buf[0].lati), sizeof(dst_buf[0].longi),
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};

/* Define an array of Particles */
Particle p_data[NRECORDS] = {{"zero", 0, 0, 0.0F, 0.0}, {"one", 10, 10, 1.0F, 10.0},
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2 changes: 1 addition & 1 deletion hl/examples/ex_table_10.c
Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ main(void)
size_t dst_offset[NFIELDS] = {HOFFSET(Particle, name), HOFFSET(Particle, lati), HOFFSET(Particle, longi),
HOFFSET(Particle, pressure), HOFFSET(Particle, temperature)};
size_t dst_sizes[NFIELDS] = {sizeof(dst_buf[0].name), sizeof(dst_buf[0].lati), sizeof(dst_buf[0].longi),
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};
sizeof(dst_buf[0].pressure), sizeof(dst_buf[0].temperature)};

/* Define field information */
const char *field_names[NFIELDS] = {"Name", "Latitude", "Longitude", "Pressure", "Temperature"};
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6 changes: 3 additions & 3 deletions hl/test/gen_test_ds.c
Original file line number Diff line number Diff line change
Expand Up @@ -136,9 +136,9 @@ create_long_dataset(hid_t fid, const char *name, const char *dsidx)
int rankds = 1;
hsize_t dims[4] = {DIM1_SIZE, DIM2_SIZE, DIM3_SIZE, DIM4_SIZE};
long buf[DIM_DATA * 3 * 2] = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 1, 2, 3, 4, 5, 6,
7, 8, 9, 10, 11, 12, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 1, 2, 3, 4, 5, 6,
7, 8, 9, 10, 11, 12, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12};
7, 8, 9, 10, 11, 12, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 1, 2, 3, 4, 5, 6,
7, 8, 9, 10, 11, 12, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12};
hsize_t s1_dim[1] = {DIM1_SIZE};
hsize_t s2_dim[1] = {DIM2_SIZE};
hsize_t s3_dim[1] = {DIM3_SIZE};
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20 changes: 10 additions & 10 deletions hl/test/test_table.c
Original file line number Diff line number Diff line change
Expand Up @@ -236,13 +236,13 @@ test_table(hid_t fid, int do_write)
0.0,
0,
},
{"one", 10, 1.0F, 10.0, 10},
{"two", 20, 2.0F, 20.0, 20},
{"three", 30, 3.0F, 30.0, 30},
{"four", 40, 4.0F, 40.0, 40},
{"five", 50, 5.0F, 50.0, 50},
{"six", 60, 6.0F, 60.0, 60},
{"seven", 70, 7.0F, 70.0, 70}};
{"one", 10, 1.0F, 10.0, 10},
{"two", 20, 2.0F, 20.0, 20},
{"three", 30, 3.0F, 30.0, 30},
{"four", 40, 4.0F, 40.0, 40},
{"five", 50, 5.0F, 50.0, 50},
{"six", 60, 6.0F, 60.0, 60},
{"seven", 70, 7.0F, 70.0, 70}};
/* buffers for the field "Pressure" and "New_field" */
float pressure_in[NRECORDS] = {0.0F, 1.0F, 2.0F, 3.0F, 4.0F, 5.0F, 6.0F, 7.0F};
float pressure_out[NRECORDS];
Expand Down Expand Up @@ -302,8 +302,8 @@ test_table(hid_t fid, int do_write)
HOFFSET(particle2_t, pressure), HOFFSET(particle2_t, temperature),
HOFFSET(particle2_t, lati), HOFFSET(particle2_t, new_field)};
size_t dst_sizes2[NFIELDS + 1] = {sizeof(rbuf2[0].name), sizeof(rbuf2[0].longi),
sizeof(rbuf2[0].pressure), sizeof(rbuf2[0].temperature),
sizeof(rbuf2[0].lati), sizeof(rbuf2[0].new_field)};
sizeof(rbuf2[0].pressure), sizeof(rbuf2[0].temperature),
sizeof(rbuf2[0].lati), sizeof(rbuf2[0].new_field)};
/*-------------------------------------------------------------------------
* initialize table parameters
* size and the offsets of struct members in memory
Expand Down Expand Up @@ -353,7 +353,7 @@ test_table(hid_t fid, int do_write)
HOFFSET(particle_t, pressure), HOFFSET(particle_t, temperature),
HOFFSET(particle_t, lati)};
size_t field_size[NFIELDS] = {sizeof(rbuf[0].name), sizeof(rbuf[0].longi), sizeof(rbuf[0].pressure),
sizeof(rbuf[0].temperature), sizeof(rbuf[0].lati)};
sizeof(rbuf[0].temperature), sizeof(rbuf[0].lati)};

const char *field_names4[NFIELDS + 1] = {"F1", "F2", "F3", "F4", "F5", "F6"};
hid_t field_type4[NFIELDS + 1];
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3 changes: 1 addition & 2 deletions java/test/TestAll.java
Original file line number Diff line number Diff line change
Expand Up @@ -28,5 +28,4 @@
TestH5Obasic.class, TestH5Ocopy.class, TestH5Ocreate.class, TestH5PL.class,
TestH5Z.class})

public class TestAll {
}
public class TestAll {}
4 changes: 2 additions & 2 deletions java/test/TestH5D.java
Original file line number Diff line number Diff line change
Expand Up @@ -939,8 +939,8 @@ public int callback(byte[] elem_buf, long elem_id, int ndim, long[] point, H5D_i
public void testH5Dvlen_get_buf_size()
{
String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
"Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!",
"S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
"Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!",
"S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
long vl_size = -1; /* Number of bytes used */
long str_data_bytes = 0;
for (int idx = 0; idx < str_data.length; idx++)
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4 changes: 2 additions & 2 deletions java/test/TestH5F.java
Original file line number Diff line number Diff line change
Expand Up @@ -45,8 +45,8 @@ public class TestH5F {
private static final int[] OBJ_COUNTS = {COUNT_OBJ_FILE, COUNT_OBJ_DATASET, COUNT_OBJ_GROUP,
COUNT_OBJ_DATATYPE, COUNT_OBJ_ATTR, COUNT_OBJ_ALL};
private static final int[] OBJ_TYPES = {HDF5Constants.H5F_OBJ_FILE, HDF5Constants.H5F_OBJ_DATASET,
HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE,
HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL};
HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE,
HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL};
long H5fid = HDF5Constants.H5I_INVALID_HID;

private final void _deleteFile(String filename)
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2 changes: 1 addition & 1 deletion java/test/TestH5G.java
Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@ public class TestH5G {
private static final String H5_FILE = "testG.h5";
private static final String H5_FILE2 = "testG2.h5";
private static final String[] GROUPS = {"/G1", "/G1/G11", "/G1/G12", "/G1/G11/G111",
"/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114"};
"/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114"};
private static final String[] GROUPS2 = {"/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
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2 changes: 1 addition & 1 deletion java/test/TestH5Plist.java
Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,7 @@ public class TestH5Plist {

private static final String PROP3_NAME = "Property 3";
private static final char[] prop3_def = {'T', 'e', 'n', ' ', 'c',
'h', 'a', 'r', 's', ' '}; // Property 3 default value
'h', 'a', 'r', 's', ' '}; // Property 3 default value
private static final int PROP3_SIZE = 10;

private static final String PROP4_NAME = "Property 4";
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