Minor documentation updates

git-svn-id: svn://scm.r-forge.r-project.org/svnroot/chnosz/pkg/CHNOSZ@806 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

DESCRIPTION

@@ -1,6 +1,6 @@
-Date: 2023-09-14
+Date: 2023-09-19
 Package: CHNOSZ
-Version: 2.0.0-25
+Version: 2.0.0-26
 Title: Thermodynamic Calculations and Diagrams for Geochemistry
 Authors@R: c(
     person("Jeffrey", "Dick", , "[email protected]", role = c("aut", "cre"),

inst/NEWS.Rd

@@ -12,11 +12,11 @@
 % links to vignettes 20220723
 \newcommand{\viglink}{\ifelse{html}{\out{<a href="../CHNOSZ/doc/#1.html"><strong>#1.Rmd</strong></a>}}{\bold{#1.Rmd}}}
 
-\section{Changes in CHNOSZ version 2.0.0-24 (2023-09-11)}{
+\section{Changes in CHNOSZ version 2.0.0-26 (2023-09-19)}{
 
     \itemize{
 
-      \item Add FAQ vignette with the following questions:
+      \item Add \viglink{FAQ} vignette with the following questions:
 
       \itemize{
 
@@ -34,17 +34,20 @@
       in the FAQ (\dQuote{How can minerals with phase transitions be added to
       the database?}).
 
-      \item Restore \file{EOSregress.R}, \file{eos-regress.Rmd}, and
-      \file{demo/adenine.R}.
+      \item Restore \file{EOSregress.R} and its reverse dependencies
+      \file{eos-regress.Rmd} and \file{demo/adenine.R}. Thanks to Kris Fecteau
+      and Kirt Robinson for the suggestion.
 
       \item Rename \code{checkGHS()} and \code{checkEOS()} to
       \code{check.GHS()} and \code{check.EOS()} and make
       \code{return.difference} TRUE by default.
 
-      \item Where the alternate basis species include one of the axis variables
-      on a diagram, \code{mosaic()} now calls \code{affinity()} with the
-      appropriate argument names and adjusts the labels for the diagram
-      (\dQuote{total C}, \dQuote{total S}, etc.).
+      \item \code{mosaic()} now handles the situation where the alternate basis
+      species include one of the axis variables on a diagram (by changing the
+      argument names in its internal calls to \code{affinity()}) and
+      adjusts the labels for the diagram accordingly (e.g. \dQuote{total C},
+      \dQuote{total S}, etc.). Thanks to Evgeniy Bastrakov for the feature
+      request.
 
       \item Fix bug in \code{subcrt()} for \code{exceed.Ttr} not applied to
       automatically balanced reactions (it was stuck on FALSE regardless of the

vignettes/FAQ.Rmd

@@ -168,9 +168,9 @@ CHNOSZ and [schnoz](https://en.wiktionary.org/wiki/schnozz) are homophones.
 
 ## How should CHNOSZ be cited?
 
-* Cite this paper as the general reference for CHNOSZ: @Dic19.
-* Cite this paper for diagrams with multiple metals: @Dic21b.
-* Cite this paper for metastable equilibrium calculations for proteins: @Dic08.
+* This paper is the general reference for CHNOSZ: @Dic19.
+* This paper describes diagrams with multiple metals: @Dic21b.
+* This paper describes metastable equilibrium calculations for proteins: @Dic08.
 * The [<span style="color:blue">*OBIGT thermodynamic database*</span>](OBIGT.html) represents the work of many researchers.
 **If you publish results that depend on any of these data, please cite the primary sources.**
 Use `r info_` to show the reference keys for particular species and `r thermo.refs_` to list the bibliographic details: