Customize github actions (#137)

.github/workflows/test.yml

@@ -1,43 +1,61 @@
-name: Python application
+name: Lint and test
 
 on:
   push:
     branches: [master]
   pull_request:
 
-permissions:
-  contents: read
-
 jobs:
-  build:
+  linting:
+    runs-on: ubuntu-latest
 
-    runs-on: ${{ matrix.os }}
-    strategy:
-      matrix:
-        os: [ubuntu-latest, macost-latest]
-        python-version: [3.7, 3.8, 3.9]
-
     steps:
-    - uses: actions/checkout@v3
+    - name: Cancel previous workflows that are still running
+      uses: styfle/[email protected]
+      with:
+        access_token: ${{ github.token }}
 
-    - name: Set up Python ${{ matrix.python-version }}
+    - name: Checkout most recent commit
+      uses: actions/checkout@v3
+
+    - name: Set up Python 3.9
       uses: actions/setup-python@v3
       with:
-        python-version: ${{ matrix.python-version }}
+        python-version: 3.9
 
     - name: List dependencies
       run: |
         pip freeze
 
     - name: Lint
       run: |
-        pip install flake8, pydocstyle
+        pip install 'flake8==5.0.3' 'pydocstyle==6.1.1'
         flake8 deepdow tests
         pydocstyle deepdow
 
+  testing:
+    needs: linting
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: [3.7, 3.8, 3.9]
+    steps:
+    - name: Checkout most recent commit
+      uses: actions/checkout@v3
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+
     - name: Install dependencies
       run: |
-        pip install .[docs,examples]
+        pip install .[dev,docs,examples]
+
+    - name: List dependencies
+      run: |
+        pip freeze
 
     - name: Run unittests
       run: |
@@ -48,5 +66,5 @@ jobs:
         pip install sphinx
         sphinx-build -b doctest docs/ temp_doctest
         
-    - name: Run cover coverage
-      uses: codecov/codecov-action@v1
+    - name: Run coverage
+      uses: codecov/codecov-action@v3

codecov.yml

@@ -0,0 +1 @@
+comment: false

deepdow/experiments.py

@@ -38,8 +38,8 @@ def metrics(self):
             `lookback`, `metric`, `model`, `timestamp`, `value`.
         """
         master_list = []  # over all epochs
-        for l in self.database.values():
-            master_list.extend(l)
+        for el in self.database.values():
+            master_list.extend(el)
 
         return pd.DataFrame(master_list)
 

deepdow/visualize.py

@@ -312,7 +312,7 @@ def plot_weight_anim(weights, always_visible=None, n_displayed_assets=None, n_se
         colors_ = None
 
     elif isinstance(colors, dict):
-        colors_ = [colors.get(l, 'black') for l in labels]
+        colors_ = [colors.get(label, 'black') for label in labels]
 
     elif isinstance(colors, cm.colors.ListedColormap):
         colors_ = cycle(colors.colors)

setup.cfg

@@ -7,7 +7,8 @@ convention = numpy
 
 [tool:pytest]
 addopts = -v
+          --color=yes
           --cov=deepdow/
           --cov-report=term
           --disable-warnings
-          --tb=short
+          --tb=short