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meier-rene committed Oct 25, 2024
1 parent 65e46e5 commit 3f7ee62
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Showing 11 changed files with 14 additions and 14 deletions.
2 changes: 1 addition & 1 deletion MetFragCommandLine/pom.xml
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<parent>
<groupId>de.ipbhalle.metfrag</groupId>
<artifactId>MetFrag</artifactId>
<version>2.6.0 </version>
<version>2.6.1</version>
</parent>
<groupId>de.ipbhalle.metfrag.commandline</groupId>
<artifactId>MetFragCommandLine</artifactId>
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2 changes: 1 addition & 1 deletion MetFragLib/pom.xml
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<parent>
<groupId>de.ipbhalle.metfrag</groupId>
<artifactId>MetFrag</artifactId>
<version>2.6.0 </version>
<version>2.6.1</version>
</parent>
<packaging>jar</packaging>
<groupId>de.ipbhalle.metfraglib</groupId>
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2 changes: 1 addition & 1 deletion MetFragR/pom.xml
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<parent>
<groupId>de.ipbhalle.metfrag</groupId>
<artifactId>MetFrag</artifactId>
<version>2.6.0 </version>
<version>2.6.1</version>
</parent>
<groupId>de.ipbhalle.metfrag.r</groupId>
<artifactId>MetFragR</artifactId>
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2 changes: 1 addition & 1 deletion MetFragR/rpackage/metfRag/DESCRIPTION
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Package: metfRag
Type: Package
Title: Identification of metabolites using mass spectrometry data
Version: 2.6.0
Version: 2.6.1
Date: 2024-23-10
Author: Christoph Ruttkies <[email protected]>, Steffen Neumann <[email protected]>, Adrian Helmchen
Maintainer: Christoph Ruttkies <[email protected]>
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4 changes: 2 additions & 2 deletions MetFragRest/README.md
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```
mvn package
java -Dserver.port=8090 -jar target/MetFragRest-2.6.0.jar
java -Dserver.port=8090 -jar target/MetFragRest-2.6.1.jar
```

## start app
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You can override the `server.servlet.context-path` property by providing your own `application.properties` at runtime in the current working directory `./` or a `./config/` subdirectory, see [docs](https://docs.spring.io/spring-boot/docs/2.1.13.RELEASE/reference/html/boot-features-external-config.html#boot-features-external-config-application-property-files).

Finally, it is possible to override both defaults and the custom `applications.properties` on the command line at runtime. First using a system property: `java -Dserver.servlet.context-path=/mybaseurl/api/v1 -Dserver.port=8090 -jar target/MetFragRest-2.6.0.jar`, which in turn can be overriden by an application property: `java -Dserver.port=8090 -jar target/MetFragRest-2.6.0.jar --server.servlet.context-path=/commandline/api/v1` which in turn can be overridden by an environment variable: `SERVER_SERVLET_CONTEXT_PATH=/overridemybaseurl mvn spring-boot:run`.
Finally, it is possible to override both defaults and the custom `applications.properties` on the command line at runtime. First using a system property: `java -Dserver.servlet.context-path=/mybaseurl/api/v1 -Dserver.port=8090 -jar target/MetFragRest-2.6.1.jar`, which in turn can be overriden by an application property: `java -Dserver.port=8090 -jar target/MetFragRest-2.6.1.jar --server.servlet.context-path=/commandline/api/v1` which in turn can be overridden by an environment variable: `SERVER_SERVLET_CONTEXT_PATH=/overridemybaseurl mvn spring-boot:run`.
2 changes: 1 addition & 1 deletion MetFragRest/pom.xml
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<parent>
<groupId>de.ipbhalle.metfrag</groupId>
<artifactId>MetFrag</artifactId>
<version>2.6.0</version>
<version>2.6.1</version>
</parent>
<groupId>de.ipbhalle.metfrag.metfragrest</groupId>
<artifactId>MetFragRest</artifactId>
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2 changes: 1 addition & 1 deletion MetFragTools/pom.xml
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<parent>
<groupId>de.ipbhalle.metfrag</groupId>
<artifactId>MetFrag</artifactId>
<version>2.6.0 </version>
<version>2.6.1</version>
</parent>
<groupId>de.ipbhalle.metfrag.tools</groupId>
<artifactId>MetFragTools</artifactId>
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2 changes: 1 addition & 1 deletion MetFragWeb/pom.xml
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<parent>
<groupId>de.ipbhalle.metfrag</groupId>
<artifactId>MetFrag</artifactId>
<version>2.6.0 </version>
<version>2.6.1</version>
</parent>
<groupId>de.ipbhalle.metfragweb</groupId>
<artifactId>MetFragWeb</artifactId>
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@SessionScoped
public class MetFragWebBean implements Serializable {

private final String version = "v2.6.0";
private final String version = "v2.6.1";
/*
* combines all the settings
*/
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4 changes: 2 additions & 2 deletions README.md
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==================

##### Requirements
- Java = openjdk11
- Apache Maven = 3.8
- Java 17
- Apache Maven 3.8

##### Sources
- download sources by cloning git repository<br>
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4 changes: 2 additions & 2 deletions pom.xml
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<modelVersion>4.0.0</modelVersion>
<groupId>de.ipbhalle.metfrag</groupId>
<artifactId>MetFrag</artifactId>
<version>2.6.0 </version>
<version>2.6.1</version>
<packaging>pom</packaging>
<name>MetFrag</name>
<modules>
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<dependency>
<groupId>de.ipbhalle.metfraglib</groupId>
<artifactId>MetFragLib</artifactId>
<version>2.6.0 </version>
<version>2.6.1</version>
</dependency>
<dependency>
<groupId>junit</groupId>
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