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cyREST: RESTful API for Cytoscape

A new way to access Cytoscape from your favorite tools

News

• 11/9/2014: 0.9.6 released. TSV support for table GET method.
• 10/14/2014: 0.9.3 released. This version has new Session API.
• 10/6/2014: 0.9.0 released! It is available from App Store.

Quick Introduction

With cyREST, you can:

• Exchange data between Cytoscape and IPython Notebook
• Directly visualize network data stored as igraph object in R session
• Script your workflow in your favorite programming languages

High-res version

High-res version

Table of Contents

Introduction: What is cyREST?

Installation

Quick Start Guide

User Guide for Popular Programming Languages

• Python
• R
• JavaScript (Node.js)
• (More coming soon...)

Complete REST API Documentation V1

Roadmap

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Questions?

Please send us your questions and comments to our mailing list.

License

• Source Code: The MIT license
• Documentation: CC BY-SA 4.0