Tutorials

User Guide for Popular Platforms

Window Users: Some of the examples may not work on Windows. In that case, please use our Docker container.

Python

R

JavaScript (Node.js)

(More coming soon...)

Workshop Materials

We had several workshops using cyREST and other tools. The following is the link to both lecture slides and course materials (sample code):

• VIZBI 2015 Tutorial: Cytoscape, IPython, Docker and Reproducible Data Visualization Workflow - 3/24/2015

  • Lecture slides

• SDCSB Cytoscape Advanced Tutorial - 4/17/2015

  • Lecture slides

Docker

Since you need to install a lot of applications and libraries to run typical data visualization workflows, we used Docker to build portable data analysis environment. If you are not familiar with Docker, please read the following document:

• Docker and Data Visualization