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Semiring Applications - All pairs shortest path (Tropical semiring) + Ridge Linear Regression (Semiring) #6794

Semiring Applications - All pairs shortest path (Tropical semiring) + Ridge Linear Regression (Semiring)

Semiring Applications - All pairs shortest path (Tropical semiring) + Ridge Linear Regression (Semiring) #6794

Workflow file for this run

name: CI
on:
push:
branches:
- main
- feature/**
pull_request:
schedule:
- cron: "35 03 * * *" # Daily at 8:35 PM PDT, 7:35 PM PST.
workflow_dispatch:
inputs:
should_bench:
description: "Should Benchmark? (`true`)"
required: true
default: "false"
jobs:
pre_job:
runs-on: ubuntu-latest
outputs:
should_skip: ${{ steps.skip_check.outputs.should_skip }}
steps:
- id: skip_check
uses: fkirc/[email protected]
with:
cancel_others: "true"
check:
name: Lint and Check
if: ${{ needs.pre_job.outputs.should_skip != 'true' || github.event_name != 'pull_request' }}
timeout-minutes: 20
needs: pre_job
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest]
rust_release: [pinned-nightly, latest-nightly]
exclude:
# For non-pull requests, event_name != 'pull_request' will be true, and 'nothing' is
# truthy, so the entire && operator will resolve to 'nothing'. Then the || operator will
# resolve to 'nothing' so we will exclude 'nothing'. https://stackoverflow.com/a/73822998
- rust_release: ${{ (needs.pre_job.outputs.should_skip != 'true' && 'nothing') || 'pinned-nightly' }}
- rust_release: ${{ (github.event_name != 'pull_request' && 'nothing') || 'latest-nightly' }}
env:
CARGO_TERM_COLOR: always
CARGO_INCREMENTAL: 0
CARGO_PROFILE_DEV_STRIP: "debuginfo"
CARGO_PROFILE_TEST_STRIP: "debuginfo"
CARGO_PROFILE_RELEASE_STRIP: "debuginfo"
steps:
- name: Checkout sources
uses: actions/checkout@v3
- name: Install nightly toolchain
uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: nightly
override: ${{ matrix.rust_release == 'latest-nightly' }}
components: rustfmt, clippy
- name: Run sccache-cache
if: matrix.rust_release == 'pinned-nightly'
uses: mozilla-actions/[email protected]
- name: Set Rust caching env vars
if: matrix.rust_release == 'pinned-nightly'
uses: actions/github-script@v6
with:
script: |
core.exportVariable('SCCACHE_GHA_ENABLED', 'true');
core.exportVariable('RUSTC_WRAPPER', 'sccache');
- name: Run cargo fmt
if: ${{ matrix.os == 'ubuntu-latest' }}
run: cargo fmt --all -- --check
- name: Run cargo clippy
run: cargo clippy --all-targets --features python -- -D warnings
- name: Run cargo check
run: cargo check --all-targets --features python
- name: Run cargo check (no default features)
run: cargo check --all-targets --no-default-features
check-wasm:
name: Check WebAssembly
if: ${{ needs.pre_job.outputs.should_skip != 'true' || github.event_name != 'pull_request' }}
timeout-minutes: 10
needs: pre_job
runs-on: ubuntu-latest
strategy:
matrix:
rust_release: [pinned-nightly, latest-nightly]
exclude:
# For non-pull requests, event_name != 'pull_request' will be true, and 'nothing' is
# truthy, so the entire && operator will resolve to 'nothing'. Then the || operator will
# resolve to 'nothing' so we will exclude 'nothing'. https://stackoverflow.com/a/73822998
- rust_release: ${{ (needs.pre_job.outputs.should_skip != 'true' && 'nothing') || 'pinned-nightly' }}
- rust_release: ${{ (github.event_name != 'pull_request' && 'nothing') || 'latest-nightly' }}
steps:
- name: Checkout sources
uses: actions/checkout@v3
- name: Install nightly toolchain
uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: nightly
target: wasm32-unknown-unknown
override: ${{ matrix.rust_release == 'latest-nightly' }}
- name: Check hydroflow_lang
uses: actions-rs/cargo@v1
with:
command: check
args: -p hydroflow_lang --target wasm32-unknown-unknown
test:
name: Test Suite
if: ${{ needs.pre_job.outputs.should_skip != 'true' || github.event_name != 'pull_request' }}
timeout-minutes: 35
needs: pre_job
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest]
rust_release: [pinned-nightly, latest-nightly]
exclude:
# For non-pull requests, event_name != 'pull_request' will be true, and 'nothing' is
# truthy, so the entire && operator will resolve to 'nothing'. Then the || operator will
# resolve to 'nothing' so we will exclude 'nothing'. https://stackoverflow.com/a/73822998
- rust_release: ${{ (needs.pre_job.outputs.should_skip != 'true' && 'nothing') || 'pinned-nightly' }}
- rust_release: ${{ (github.event_name != 'pull_request' && 'nothing') || 'latest-nightly' }}
- os: ${{ (github.event_name != 'pull_request' && 'nothing') || 'windows-latest' }}
env:
CARGO_TERM_COLOR: always
CARGO_INCREMENTAL: 0
CARGO_PROFILE_DEV_STRIP: "debuginfo"
CARGO_PROFILE_TEST_STRIP: "debuginfo"
CARGO_PROFILE_RELEASE_STRIP: "debuginfo"
steps:
- name: Checkout sources
uses: actions/checkout@v3
- name: Install nightly toolchain
uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: nightly
override: ${{ matrix.rust_release == 'latest-nightly' }}
- name: Run sccache-cache
if: matrix.rust_release == 'pinned-nightly'
uses: mozilla-actions/[email protected]
- name: Set Rust caching env vars
if: matrix.rust_release == 'pinned-nightly'
uses: actions/github-script@v6
with:
script: |
core.exportVariable('SCCACHE_GHA_ENABLED', 'true');
core.exportVariable('RUSTC_WRAPPER', 'sccache');
- name: Install cargo-nextest (linux)
if: ${{ matrix.os == 'ubuntu-latest' }}
run: curl -LsSf https://get.nexte.st/latest/linux | tar zxf - -C ${CARGO_HOME:-~/.cargo}/bin
- name: Install cargo-nextest (windows)
if: ${{ matrix.os == 'windows-latest' }}
shell: bash
run: curl -LsSf https://get.nexte.st/latest/windows-tar | tar zxf - -C ${CARGO_HOME:-~/.cargo}/bin
- name: Run cargo nextest on all targets
run: cargo nextest run --no-fail-fast --features python --features deploy --all-targets
- name: Run doctests
run: cargo test --no-fail-fast --features python --features deploy --doc
- name: Install Python
uses: actions/setup-python@v4
with:
python-version: '3.11'
- name: Build CLI (Linux)
if: ${{ matrix.os == 'ubuntu-latest' }}
run: |
cd hydro_deploy/hydro_cli
python -m venv .venv
source .venv/bin/activate
pip install maturin
maturin develop
- name: Build CLI (Windows)
if: ${{ matrix.os == 'windows-latest' }}
run: |
cd hydro_deploy/hydro_cli
python -m venv .venv
.venv/Scripts/activate
pip install maturin
maturin develop
- name: Run Python tests (Linux)
if: ${{ matrix.os == 'ubuntu-latest' }}
run: |
cd hydro_deploy/hydro_cli
source .venv/bin/activate
cd python_tests
pip install -r requirements.txt
RUST_BACKTRACE=1 pytest
- name: Run Python tests (Windows)
if: ${{ matrix.os == 'windows-latest' }}
run: |
cd hydro_deploy/hydro_cli
.venv/Scripts/activate
cd python_tests
pip install -r requirements.txt
pytest
test-wasm:
name: Test Suite (WebAssembly)
if: ${{ needs.pre_job.outputs.should_skip != 'true' || github.event_name != 'pull_request' }}
timeout-minutes: 15
needs: pre_job
runs-on: ubuntu-latest
strategy:
matrix:
rust_release: [pinned-nightly, latest-nightly]
exclude:
# For non-pull requests, event_name != 'pull_request' will be true, and 'nothing' is
# truthy, so the entire && operator will resolve to 'nothing'. Then the || operator will
# resolve to 'nothing' so we will exclude 'nothing'. https://stackoverflow.com/a/73822998
- rust_release: ${{ (needs.pre_job.outputs.should_skip != 'true' && 'nothing') || 'pinned-nightly' }}
- rust_release: ${{ (github.event_name != 'pull_request' && 'nothing') || 'latest-nightly' }}
steps:
- name: Checkout sources
uses: actions/checkout@v3
- name: Install nightly toolchain
uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: nightly
target: wasm32-unknown-unknown
override: ${{ matrix.rust_release == 'latest-nightly' }}
- name: Get wasm-bindgen version
id: wasm-bindgen-version
run: echo "VERSION=$(cargo pkgid wasm-bindgen-shared | cut -d '@' -f2)" >> "$GITHUB_OUTPUT"
- name: Install WebAssembly test runner
uses: actions-rs/cargo@v1
with:
command: install
args: wasm-bindgen-cli@${{ steps.wasm-bindgen-version.outputs.VERSION }}
- name: Run cargo test
uses: actions-rs/cargo@v1
env:
CARGO_TARGET_WASM32_UNKNOWN_UNKNOWN_RUNNER: wasm-bindgen-test-runner
with:
command: test
args: -p hydroflow --target wasm32-unknown-unknown --tests --no-fail-fast
build-website:
name: Build Website
if: ${{ needs.pre_job.outputs.should_skip != 'true' || github.event_name != 'pull_request' }}
timeout-minutes: 25
needs: pre_job
runs-on: ubuntu-latest
steps:
- name: Checkout sources
uses: actions/checkout@v3
- name: Build Website
run: bash build_docs.bash x86_64-linux-gnu-ubuntu-20.04
docs:
name: Docs (rustdoc)
timeout-minutes: 10
needs: pre_job
if: ${{ needs.pre_job.outputs.should_skip != 'true' }}
runs-on: ubuntu-latest
env:
WWW_DIR: target
steps:
- name: Checkout sources
uses: actions/checkout@v3
- name: Install nightly toolchain
uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: nightly
- name: Run cargo doc
uses: actions-rs/cargo@v1
with:
command: doc
args: --no-deps
env:
RUSTDOCFLAGS: -Dwarnings
- name: Move design docs to output
shell: bash
run: |
mv design_docs "$WWW_DIR/"
- name: Push to gh-pages
# Do not deploy PRs.
if: ${{ github.event_name != 'pull_request' }}
shell: bash
run: |
git -C "$WWW_DIR" init -q
git -C "$WWW_DIR" remote add origin "$(git remote get-url origin)"
git -C "$WWW_DIR" config credential.helper "$(git config credential.helper)"
git -C "$WWW_DIR" config 'http.https://github.com/.extraheader' "$(git config 'http.https://github.com/.extraheader')"
git -C "$WWW_DIR" config core.autocrlf input
git -C "$WWW_DIR" config core.safecrlf false
git -C "$WWW_DIR" fetch origin gh-pages:gh-pages || true
git -C "$WWW_DIR" symbolic-ref HEAD refs/heads/gh-pages
git -C "$WWW_DIR" reset
git -C "$WWW_DIR" add doc design_docs
if git -C "$WWW_DIR" -c 'user.name=github-actions[bot]' -c 'user.email=41898282+github-actions[bot]@users.noreply.github.com' \
commit -m "Update rustdoc $(date -I) $(git rev-parse HEAD)";
then
git -C "$WWW_DIR" push -u origin gh-pages --quiet
else
echo 'No changes to commit'
fi
benches:
name: Benchmarks
timeout-minutes: 30
needs: pre_job
if: |
needs.pre_job.outputs.should_skip != 'true' &&
(
github.event_name == 'schedule'
|| (github.event_name == 'workflow_dispatch' && github.event.inputs.should_bench == 'true')
|| (github.event_name == 'push' && contains(github.event.head_commit.message, '[ci-bench]'))
|| (
github.event_name == 'pull_request'
&& (
contains(github.event.pull_request.title, '[ci-bench]')
|| contains(github.event.pull_request.body, '[ci-bench]')
)
)
)
runs-on: ubuntu-latest
env:
WWW_DIR: target
steps:
- name: Checkout sources
uses: actions/checkout@v3
- name: Install nightly toolchain
uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: nightly
- name: Checkout gh-pages
shell: bash
run: |
mkdir -p "$WWW_DIR"
git -C "$WWW_DIR" init -q
git -C "$WWW_DIR" remote add origin "$(git remote get-url origin)"
git -C "$WWW_DIR" config credential.helper "$(git config credential.helper)"
git -C "$WWW_DIR" config 'http.https://github.com/.extraheader' "$(git config 'http.https://github.com/.extraheader')"
git -C "$WWW_DIR" config core.autocrlf input
git -C "$WWW_DIR" config core.safecrlf false
git -C "$WWW_DIR" checkout -b gh-pages
git -C "$WWW_DIR" fetch origin gh-pages
git -C "$WWW_DIR" reset --soft origin/gh-pages
git -C "$WWW_DIR" reset
git -C "$WWW_DIR" checkout -- bench criterion
mkdir -p "$WWW_DIR/bench"
- name: Run benchmark
run: |
time cargo bench -p benches -- hydroflow --output-format bencher | tee output.txt
time cargo bench -p benches -- micro/ops/ --output-format bencher | tee -a output.txt
- name: Generate benchmark page
uses: benchmark-action/github-action-benchmark@v1
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
tool: cargo
output-file-path: output.txt
external-data-json-path: target/bench/data.json
- name: Write benchmark JSON
run: echo 'window.BENCHMARK_DATA = ' | cat - "$WWW_DIR/bench/data.json" > "$WWW_DIR/bench/data.js"
- name: Write benchmark HTML
shell: bash
run: node --input-type=module -e "$(curl -sSL https://raw.githubusercontent.com/benchmark-action/github-action-benchmark/master/src/default_index_html.ts) console.log(DEFAULT_INDEX_HTML)" > "$WWW_DIR/bench/index.html"
- name: Push to gh-pages
# Do not deploy PRs, only benchmark main branch.
if: ${{ github.event_name != 'pull_request' && github.ref == 'refs/heads/main' }}
shell: bash
run: |
cp -r .github/gh-pages/* .github/gh-pages/.gitignore "$WWW_DIR/"
git -C "$WWW_DIR" fetch origin gh-pages
git -C "$WWW_DIR" reset --soft origin/gh-pages
git -C "$WWW_DIR" reset
git -C "$WWW_DIR" add bench criterion $(ls .github/gh-pages)
if git -C "$WWW_DIR" -c 'user.name=github-actions[bot]' -c 'user.email=41898282+github-actions[bot]@users.noreply.github.com' \
commit -m "Update Benchmarks $(date -I) $(git rev-parse HEAD)";
then
git -C "$WWW_DIR" push -u origin gh-pages --quiet
else
echo 'No changes to commit'
fi