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Fix #127 update paralle write test to set table ids #128

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merged 3 commits into from
Oct 1, 2023
Merged

Fix #127 update paralle write test to set table ids #128

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63e220b
Fix #127 update paralle write test to set table ids
oruebel Oct 1, 2023
9215fe9
Merge branch 'dev' into fix/par_write_tests
mavaylon1 Oct 1, 2023
2ab6711
Update CHANGELOG
oruebel Oct 1, 2023
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2 changes: 1 addition & 1 deletion CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
* Enhanced ZarrIO to resolve object references lazily on read similar to HDMF's `HDF5IO` backend. @mavaylon1 [#120](https://github.com/hdmf-dev/hdmf-zarr/pull/120)

### New Features
* Added parallel write support for the ``ZarrIO`` for datasets wrapped with ``GenericDataChunkIterator``. @CodyCBakerPhD [#118](https://github.com/hdmf-dev/hdmf-zarr/pull/118)
* Added parallel write support for the ``ZarrIO`` for datasets wrapped with ``GenericDataChunkIterator``. @CodyCBakerPhD [#118](https://github.com/hdmf-dev/hdmf-zarr/pull/118) @oruebel [#128](https://github.com/hdmf-dev/hdmf-zarr/pull/128)

### Dependencies
* Updated HDMF and PyNWB version to the most recent release @mavaylon1 [#120](https://github.com/hdmf-dev/hdmf-zarr/pull/120)
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12 changes: 10 additions & 2 deletions tests/unit/test_parallel_write.py
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Expand Up @@ -189,7 +189,12 @@ def test_simple_tqdm(tmpdir):
display_progress=True,
)
)
dynamic_table = DynamicTable(name="TestTable", description="", columns=[column])
dynamic_table = DynamicTable(
name="TestTable",
description="",
columns=[column],
id=list(range(3)) # must provide id's when all columns are iterators
)
io.write(container=dynamic_table, number_of_jobs=number_of_jobs)

assert expected_desc in tqdm_out.getvalue()
Expand Down Expand Up @@ -222,7 +227,10 @@ def test_compound_tqdm(tmpdir):
)
)
dynamic_table = DynamicTable(
name="TestTable", description="", columns=[pickleable_column, not_pickleable_column]
name="TestTable",
description="",
columns=[pickleable_column, not_pickleable_column],
id=list(range(3)) # must provide id's when all columns are iterators
)
io.write(container=dynamic_table, number_of_jobs=number_of_jobs)

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