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refpkgs
cmorganl edited this page Jun 10, 2021
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11 revisions
| Name | Description | Leaf nodes | TreeSAPP | Created | Path |
|---|---|---|---|---|---|
| Aldedh | 'Aldehyde dehydrogenase superfamily [COG1012]' | 3411 | 0.11.0 | 2021-04-19 | Ambiguous/Aldedh/seed_refpkg/final_outputs |
| AA10 | '' | 699 | 0.9.6 | 2020-12-13 | CAZymes/AA10/seed_refpkg/final_outputs |
| GH101 | 'Glycoside hydrolase family 101' | 113 | 0.9.7 | 2021-01-08 | CAZymes/GH101/seed_refpkg/final_outputs |
| GH102 | 'Glycoside hydrolase family 102' | 727 | 0.9.7 | 2021-01-08 | CAZymes/GH102/seed_refpkg/final_outputs |
| GH103 | 'Glycoside hydrolase family 103' | 1145 | 0.9.7 | 2021-01-08 | CAZymes/GH103/seed_refpkg/final_outputs |
| GH109 | 'Glycoside hydrolase family 109' | 376 | 0.8.4 | 2020-06-23 | CAZymes/GH109/seed_refpkg/final_outputs |
| GH115 | 'Glycoside hydrolase family 115' | 267 | 0.8.6 | 2020-06-29 | CAZymes/GH115/seed_refpkg/final_outputs |
| GH126 | 'Glycoside hydrolase family 126' | 112 | 0.9.2 | 2020-10-07 | CAZymes/GH126/seed_refpkg/final_outputs |
| GH163 | 'Glycoside hydrolase family 163' | 102 | 0.8.4 | 2020-06-23 | CAZymes/GH163/seed_refpkg/final_outputs |
| GH67 | 'Glycoside hydrolase family 67' | 372 | 0.8.6 | 2020-06-29 | CAZymes/GH67/seed_refpkg/final_outputs |
| GH94 | 'Glycoside hydrolase family 94' | 695 | 0.9.7 | 2021-01-08 | CAZymes/GH94/seed_refpkg/final_outputs |
| PL11 | '' | 320 | 0.9.7 | 2021-01-08 | CAZymes/PL11/seed_refpkg/final_outputs |
| PilA | 'Type IV pilin N-terminus, including PilA' | 70 | 0.9.0 | 2020-09-13 | Direct_Interspecies_Electron_Transfer/pillin/seed_refpkg/final_outputs |
| PHAdeg | 'PET degradation enzymes' | 10 | 0.11.0 | 2021-04-21 | Hydrocarbons/PHA_degradation/seed_refpkg/final_outputs |
| HydA | '[FeFe] hydrogenase, group A, B1, B3' | 93 | 0.11.0 | 2021-04-21 | Hydrogen/HydA/seed_refpkg/final_outputs |
| HgcA | 'Mercury methylation enzyme complex, alpha subunit' | 108 | 0.11.0 | 2021-04-21 | Mercury/HgcA/seed_refpkg/final_outputs |
| HgcB | 'Mercury methylation enzyme complex, beta subunit' | 122 | 0.11.0 | 2021-04-21 | Mercury/HgcB/seed_refpkg/final_outputs |
| DUF2102 | '' | 50 | 0.11.0 | 2021-04-21 | Methanogenesis/DUF2102/seed_refpkg/final_outputs |
| DUF2112 | '' | 89 | 0.11.0 | 2021-04-21 | Methanogenesis/DUF2112/seed_refpkg/final_outputs |
| McrA | 'Methyl coenzyme-M reductase subunit alpha' | 193 | 0.11.0 | 2021-04-30 | Methanogenesis/McrA/seed_refpkg/final_outputs |
| McrB | 'Methyl-coenzyme M reductase beta subunit' | 122 | 0.11.0 | 2021-04-19 | Methanogenesis/McrB/seed_refpkg/final_outputs |
| McrG | 'Methyl-coenzyme M reductase gamma subunit' | 123 | 0.11.0 | 2021-04-19 | Methanogenesis/McrG/seed_refpkg/final_outputs |
| HzsA | 'Hydrazine synthase alpha subunit' | 19 | 0.11.0 | 2021-04-21 | Nitrogen_metabolism/Annamox/Hzs/seed_refpkg/final_outputs |
| NrfA | 'nitrite reductase (cytochrome c-552)' | 317 | 0.11.0 | 2021-04-21 | Nitrogen_metabolism/DNRA/NrfA/NrfA_seed/final_outputs |
| NapA | 'Periplasmic nitrate reductase, large subunit' | 748 | 0.11.0 | 2021-04-21 | Nitrogen_metabolism/Denitrification/NapA/seed_refpkg/final_outputs |
| NirK | 'nitrite reductase (NO-forming)' | 325 | 0.11.0 | 2021-04-21 | Nitrogen_metabolism/Denitrification/NirK/seed_refpkg/final_outputs |
| NirS | 'nitrite reductase (NO-forming) / hydroxylamine reductase' | 523 | 0.11.0 | 2021-04-21 | Nitrogen_metabolism/Denitrification/NirS/seed_refpkg/final_outputs |
| NorB | 'nitric oxide reductase large subunit B [COG3256]' | 464 | 0.11.0 | 2021-04-22 | Nitrogen_metabolism/Denitrification/NorB/seed_refpkg/final_outputs |
| NorC | 'nitric oxide reductase subunit C' | 172 | 0.11.0 | 2021-04-21 | Nitrogen_metabolism/Denitrification/NorC/seed_refpkg/final_outputs |
| NosZ | 'Nitrous-oxide reductase (TAT-dependent;Sec-dependent)' | 26 | 0.11.0 | 2021-04-22 | Nitrogen_metabolism/Denitrification/NosZ/seed_refpkg/final_outputs |
| NxrA | 'nitrate reductase / nitrite oxidoreductase, alpha subunit' | 866 | 0.11.0 | 2021-04-23 | Nitrogen_metabolism/Denitrification/NxrA/seed_refpkg/final_outputs |
| NifD | 'nitrogenase molybdenum-iron protein alpha chain' | 844 | 0.11.0 | 2021-04-22 | Nitrogen_metabolism/Fixation/NifD/seed_refpkg/final_outputs |
| NxrB | 'nitrate reductase / nitrite oxidoreductase, beta subunit' | 519 | 0.11.0 | 2021-04-22 | Nitrogen_metabolism/Nitrification/NxrB/seed_refpkg/final_outputs |
| XmoA | 'Alpha subunits of copper membrane monooxygenase enzymes' | 37 | 0.11.0 | 2021-04-21 | Nitrogen_metabolism/Nitrification/XmoA/XmoA_seed/final_outputs |
| ProP | '' | 7 | 0.11.0 | 2021-04-20 | Osmoprotectants/ProP/seed_refpkg/final_outputs |
| PuhA | 'Photosynthetic reaction center H subunit' | 47 | 0.11.0 | 2021-04-21 | Photosynthesis/PuhA/seed_refpkg/final_outputs |
| cbbS | 'ribulose bisphosphate carboxylase, type III (Ribulose bisphosphate carboxylase small chain)' | 597 | 0.11.0 | 2021-04-16 | Photosynthesis/cbbS/seed_refpkg/final_outputs |
| CysD | 'sulfate adenylyltransferase (SAT), small subunit' | 93 | 0.9.5 | 2020-11-20 | Sulfur_metabolism/CysD/seed_refpkg/final_outputs |
| CysH | 'phosophoadenylyl-sulfate reductase' | 2289 | 0.11.0 | 2021-03-26 | Sulfur_metabolism/CysH/seed_refpkg/final_outputs |
| CysI_Sir | '(assimilatory) sulfite reductase (NADPH) hemoprotein, beta subunit;ferredoxin dependent' | 1055 | 0.9.5 | 2020-11-20 | Sulfur_metabolism/CysI_Sir/seed_refpkg/final_outputs |
| CysJ | 'sulfite reductase [NADPH] flavoprotein, alpha-component [COG0369, EC:1.8.1.2]' | 474 | 0.9.5 | 2020-11-20 | Sulfur_metabolism/CysJ/seed_refpkg/final_outputs |
| CysN | 'Sulfate adenylyltransferase (SAT), large subunit' | 1221 | 0.9.5 | 2020-11-20 | Sulfur_metabolism/CysN/seed_refpkg/final_outputs |
| DsrAB | 'Dissimilatory sulfite reductase, alpha and beta subunits' | 560 | 0.11.0 | 2021-04-19 | Sulfur_metabolism/DsrAB/seed_refpkg/final_outputs |
| DsrC | 'sulfur relay protein, TusE/DsrC/DsvC family' | 341 | 0.9.5 | 2020-11-19 | Sulfur_metabolism/DsrC/seed_refpkg/final_outputs |
| Sat | 'Sulfate adenylyltransferase [PF01747, EC:2.7.7.4]' | 254 | 0.9.5 | 2020-11-20 | Sulfur_metabolism/Sat/seed_refpkg/final_outputs |
| SoxB | 'S-sulfosulfanyl-L-cysteine sulfohydrolase [TIGR04486]' | 1012 | 0.9.5 | 2020-11-23 | Sulfur_metabolism/SoxB/seed_refpkg/final_outputs |
| SoxY | 'Thiosulfate oxidation carrier protein [TIGR04488,ENOG501RH4J]' | 364 | 0.9.5 | 2020-11-23 | Sulfur_metabolism/SoxY/seed_refpkg/final_outputs |
| SoxZ | 'Thiosulfate oxidation carrier complex protein [TIGR04490,ENOG501N097]' | 247 | 0.9.5 | 2020-11-23 | Sulfur_metabolism/SoxZ/seed_refpkg/final_outputs |
| PF00380a | 'Ribosomal protein S9/S16' | 82 | 0.8.9 | 2020-09-08 | Translation/PF00380/seed_refpkg_arc/final_outputs |
| PF00380b | 'Ribosomal protein S9/S16' | 1065 | 0.8.9 | 2020-09-08 | Translation/PF00380/seed_refpkg_bac/final_outputs |
| PF00410a | 'Ribosomal protein S8' | 155 | 0.8.9 | 2020-09-08 | Translation/PF00410/seed_refpkg_arc/final_outputs |
| PF00410b | 'Ribosomal protein S8' | 1216 | 0.8.9 | 2020-09-08 | Translation/PF00410/seed_refpkg_bac/final_outputs |
| PF00687a | 'Ribosomal protein L1p/L10e family' | 192 | 0.8.9 | 2020-09-08 | Translation/PF00687/seed_refpkg_arc/final_outputs |
| PF00687b | 'Ribosomal protein L1p/L10e family' | 864 | 0.8.9 | 2020-09-08 | Translation/PF00687/seed_refpkg_bac/final_outputs |
| PF00750a | 'tRNA synthetases class I (R)' | 193 | 0.8.9 | 2020-09-09 | Translation/PF00750/seed_refpkg_arc/final_outputs |
| PF00750b | 'tRNA synthetases class I (R)' | 1317 | 0.8.9 | 2020-09-09 | Translation/PF00750/seed_refpkg_bac/final_outputs |
| PF00900 | 'Ribosomal family S4e' | 328 | 0.8.9 | 2020-09-11 | Translation/PF00900/seed_refpkg/final_outputs |
| PF01015 | 'Ribosomal S3Ae family' | 101 | 0.8.9 | 2020-09-07 | Translation/PF01015/seed_refpkg/final_outputs |
| PF01092 | 'Ribosomal protein S6e' | 169 | 0.8.9 | 2020-09-07 | Translation/PF01092/seed_refpkg/final_outputs |
| PF01157 | 'Ribosomal protein L21e' | 74 | 0.8.9 | 2020-09-07 | Translation/PF01157/seed_refpkg/final_outputs |
| PF01200 | 'Ribosomal protein S28e' | 129 | 0.8.9 | 2020-09-07 | Translation/PF01200/seed_refpkg/final_outputs |
| PF01280 | 'Ribosomal protein L19e' | 281 | 0.8.9 | 2020-09-07 | Translation/PF01280/seed_refpkg/final_outputs |
| PF01409a | 'tRNA synthetases class II core domain (F)' | 243 | 0.8.9 | 2020-09-08 | Translation/PF01409/seed_refpkg_arc/final_outputs |
| PF01409b | 'tRNA synthetases class II core domain (F)' | 891 | 0.8.9 | 2020-09-08 | Translation/PF01409/seed_refpkg_bac/final_outputs |
| PF01655 | 'Ribosomal protein L32' | 220 | 0.8.9 | 2020-09-07 | Translation/PF01655/seed_refpkg/final_outputs |
| PF01866 | 'Putative diphthamide synthesis protein' | 229 | 0.8.9 | 2020-09-07 | Translation/PF01866/seed_refpkg/final_outputs |
| RadA | 'Archaeal RecA family recombinase' | 53 | 0.11.1 | 2021-06-02 | Translation/RadA/seed_refpkg/final_outputs |
| RecA | 'RecA bacterial DNA recombination protein' | 1128 | 0.11.1 | 2021-05-05 | Translation/RecA/seed_refpkg/final_outputs |
| RpoB | 'RNA polymerase beta subunit' | 697 | 0.9.9 | 2021-01-21 | Translation/RpoB/seed_refpkg/final_outputs |