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Fosmid Walk

Estimates population size of fosmid pools

Credit to Avery Noonan and Kateryna Ievdokymenko.

depreciated: now integrated into Fabfos

singularity build foswalk.sif docker://quay.io/hallam_lab/fosmid-walk

singularity run -B <workspace>:/ws foswalk.sif foswalk -r /ws/<fosmid_read_file>.fq -o /ws/<output_folder>

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  • Python 83.5%
  • Shell 11.7%
  • Dockerfile 4.8%