[release] v0.2.131 (#14569)

hail-is · Jun 3, 2024 · 11d9b2f · 11d9b2f
1 parent d9d85d5
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diff --git a/hail/build.sc b/hail/build.sc
@@ -12,7 +12,7 @@ import mill.util.Jvm
 
 object Settings {
   val hailMajorMinorVersion = "0.2"
-  val hailPatchVersion = "130"
+  val hailPatchVersion = "131"
 }
 
 /** Update the millw script. */

diff --git a/hail/python/hail/docs/change_log.md b/hail/python/hail/docs/change_log.md
@@ -52,6 +52,31 @@ supports.
 policy. Their functionality or even existence may change without notice. Please contact us if you
 critically depend on experimental functionality.**
 
+## Version 0.2.131
+
+Released 2024-05-30
+
+### New Features
+
+- (hail#14560) The gvcf import stage of the VDS combiner now preserves the GT
+  of reference blocks. Some datasets have haploid calls on sex chromosomes,
+  and the fact that the reference was haploid should be preserved.
+
+### Bug Fixes
+
+- (hail#14563) The version of `notebook` installed in Hail Dataproc clusters has
+  been upgraded from 6.5.4 to 6.5.6 in order to fix a bug where Jupyter
+  Notebooks wouldn't start on clusters. The workaround involving creating
+  a cluster with `--packages='ipython<8.22'` is no longer necessary.
+
+### Deprecations
+
+- (hail#14158) Hail now supports and primarily tests against Dataproc 2.2.5,
+  Spark 3.5.0, and Java 11. We strongly recommend updating to Spark 3.5.0 and
+  Java 11. You should also update your GCS connector *after installing Hail*:
+  `curl https://broad.io/install-gcs-connector | python3`. Do not try to update
+  before installing Hail 0.2.131.
+
 ## Version 0.2.130
 
 Released 2024-10-02

diff --git a/hail/python/hailtop/batch/docs/change_log.rst b/hail/python/hailtop/batch/docs/change_log.rst
@@ -15,6 +15,13 @@ versions. In particular, Hail officially supports:
 Change Log
 ==========
 
+**Version 0.2.131**
+
+- (`#14544 <https://github.com/hail-is/hail/pull/14544>`__) `batch.read_input`
+  and `batch.read_input_group` now accept `os.PathLike` objects as well as strings.
+- (`#14328 <https://github.com/hail-is/hail/pull/14328>`__) Job resource usage
+  data can now be retrieved from the Batch API.
+
 **Version 0.2.130**
 
 - (`#14425 <https://github.com/hail-is/hail/pull/14425>`__) A job's 'always run'

diff --git a/hail/version.mk b/hail/version.mk
@@ -16,7 +16,7 @@ endif
 SCALA_VERSION ?= 2.12.18
 SPARK_VERSION ?= 3.5.0
 HAIL_MAJOR_MINOR_VERSION := 0.2
-HAIL_PATCH_VERSION := 130
+HAIL_PATCH_VERSION := 131
 HAIL_PIP_VERSION := $(HAIL_MAJOR_MINOR_VERSION).$(HAIL_PATCH_VERSION)
 HAIL_VERSION := $(HAIL_PIP_VERSION)-$(SHORT_REVISION)
 ELASTIC_MAJOR_VERSION ?= 7