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update URLs to new repo name
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black-snow committed Jul 31, 2023
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Expand Up @@ -14,8 +14,8 @@ License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/haganjam/FW_invert_biomass_allometry
BugReports: https://github.com/haganjam/FW_invert_biomass_allometry/issues
URL: https://github.com/haganjam/InvTraitR
BugReports: https://github.com/haganjam/InvTraitR/issues
Imports:
igraph,
assertthat,
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2 changes: 1 addition & 1 deletion R/helpers.R
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Expand Up @@ -82,7 +82,7 @@ download_database <- function(pkgname) {
)
remote_db_dir <- "database"

base_url <- "https://github.com/haganjam/FW_invert_biomass_allometry"
base_url <- "https://github.com/haganjam/InvTraitR"
db_files <- list(
"col_higher_taxon_matrices.rds",
"col_taxon_database.rds",
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12 changes: 6 additions & 6 deletions README.md
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@@ -1,20 +1,20 @@
# FW_invert_biomass_allometry
# InvTraitR

[![R-CMD-check](https://github.com/haganjam/FW_invert_biomass_allometry/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/haganjam/FW_invert_biomass_allometry/actions/workflows/R-CMD-check.yaml)
[![R-CMD-check](https://github.com/haganjam/InvTraitR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/haganjam/InvTraitR/actions/workflows/R-CMD-check.yaml)

Pipeline to assign body length-dry biomass allometry equations and other functional traits to a taxonomic name based on taxonomic hierarchy in freshwater invertebrates. However, the name-matching pipeline can technically be used for any taxonomic group.

## Installation

The package is WIP. It will, hopefully, be available on CRAN soon.
You can try to install it from GitHub but as it's a WIP, it may or may not
You can try to install it from GitHub, but as it's a WIP, it may or may not
work depending on the tides, temperature, the color of your socks and what
you had for dinner the day before yesterday.

So, if you feel lucky, try:

```r
install_github("haganjam/FW_invert_biomass_allometry")
install_github("haganjam/InvTraitR")
```

## Usage
Expand Down Expand Up @@ -97,8 +97,8 @@ VSC you should be prompted to open the project in a container automatically.
have `load_all()`, `test()` and `check()` ready at hand.

We use `renv` to provide reproducibility as far as it gets with R.
Use `renv::snapshot()` after changing dependencies, `renv::install()` to install declared versions
of the dependencies and `renv::update()` to update to latest CRAN versions (before pushin to CRAN).
Use `renv::snapshot()` after changing dependencies, `renv::restore()` to install declared versions
of the dependencies and `renv::update()` to update to latest CRAN versions (before pushing to CRAN).

The database files will be put into an appdata dir (given by `rappdirs`) when executing
tests or when people load the actual package. If you made changes to the DB files and need
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