poppr version 2.2.0

NEW FUNCTIONS

• incomp() will check your data to see if there are any incomparable samples.

NEW FEATURES

• Threshold argument added to filter_stats()
  (see #94)
• The pipe operator (%>%) is now exported from magrittr to make chaining
  commands easier.
• mlg.filter() can now return multiple statistics.
• The user can now control the size of the labels in the index of association
  plots with the labsize and linesize arguments in the plot method.
• private_alleles() gains a drop argument.
• recode_polyploids() can now take haplodiploid data.

BUG FIX

• An issue that caused errors in the imsn() code output was fixed
  (see #93)
• Caught bug where the mlg.filter() assignment method was using nei.dist()
  instead of diss.dist() when no distance was specified.
• A bug that resulted in significantly negative values from bitwise.ia() with
  large sample sizes was fixed. Spotted by @knausb
  (see #100)
• Fixed issue where plot_filter_stats() wasn't displaying the full range of
  MLGs
• Color vectors are now correctly parsed when passed to msn functions
  (see #55) for details. Long color
  vectors are now accepted, albiet with warning.
• An issue where mll.reset() did not reset non-MLG class objects in the mlg
  slot was fixed.

MISC

• Documentation for mlg.filter() was clarified and updated with more examples.
• The vignette "Migration from poppr version 1" has been removed.
• Previously deprecated *hierarchy() functions have been removed.