Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

New/updated queries to support CIViCpy #1142

Merged
merged 3 commits into from
Oct 29, 2024
Merged

New/updated queries to support CIViCpy #1142

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
f0a5c7e
New/updated queries to support CIViCpy
susannasiebert Oct 28, 2024
3f39f98
Update server/app/graphql/resolvers/top_level_sources.rb
susannasiebert Oct 29, 2024
f88851d
Update schema files
susannasiebert Oct 29, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion client/src/app/components/phenotypes/phenotypes-table/phenotypes-table.query.gql
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ query PhenotypesBrowse(
$hpoId: String
$sortBy: PhenotypeSort
) {
phenotypes(
browsePhenotypes(
first: $first
last: $last
before: $before
Expand Down
2 changes: 1 addition & 1 deletion client/src/app/components/therapies/therapies-table/therapies-table.query.gql
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ query TherapiesBrowse(
$therapyAlias: String,
$sortBy: TherapySort
) {
therapies(
browseTherapies(
first: $first
last: $last
before: $before
Expand Down
90 changes: 89 additions & 1 deletion client/src/app/generated/civic.apollo-helpers.ts
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -834,6 +834,19 @@ export type DiseaseFieldPolicy = {
myDiseaseInfo?: FieldPolicy<any> | FieldReadFunction<any>,
name?: FieldPolicy<any> | FieldReadFunction<any>
};
export type DiseaseConnectionKeySpecifier = ('edges' | 'nodes' | 'pageCount' | 'pageInfo' | 'totalCount' | DiseaseConnectionKeySpecifier)[];
export type DiseaseConnectionFieldPolicy = {
edges?: FieldPolicy<any> | FieldReadFunction<any>,
nodes?: FieldPolicy<any> | FieldReadFunction<any>,
pageCount?: FieldPolicy<any> | FieldReadFunction<any>,
pageInfo?: FieldPolicy<any> | FieldReadFunction<any>,
totalCount?: FieldPolicy<any> | FieldReadFunction<any>
};
export type DiseaseEdgeKeySpecifier = ('cursor' | 'node' | DiseaseEdgeKeySpecifier)[];
export type DiseaseEdgeFieldPolicy = {
cursor?: FieldPolicy<any> | FieldReadFunction<any>,
node?: FieldPolicy<any> | FieldReadFunction<any>
};
export type DiseasePopoverKeySpecifier = ('assertionCount' | 'deprecated' | 'diseaseAliases' | 'diseaseUrl' | 'displayName' | 'doid' | 'evidenceItemCount' | 'id' | 'link' | 'molecularProfileCount' | 'myDiseaseInfo' | 'name' | DiseasePopoverKeySpecifier)[];
export type DiseasePopoverFieldPolicy = {
assertionCount?: FieldPolicy<any> | FieldReadFunction<any>,
Expand Down Expand Up @@ -1813,6 +1826,19 @@ export type PhenotypeFieldPolicy = {
name?: FieldPolicy<any> | FieldReadFunction<any>,
url?: FieldPolicy<any> | FieldReadFunction<any>
};
export type PhenotypeConnectionKeySpecifier = ('edges' | 'nodes' | 'pageCount' | 'pageInfo' | 'totalCount' | PhenotypeConnectionKeySpecifier)[];
export type PhenotypeConnectionFieldPolicy = {
edges?: FieldPolicy<any> | FieldReadFunction<any>,
nodes?: FieldPolicy<any> | FieldReadFunction<any>,
pageCount?: FieldPolicy<any> | FieldReadFunction<any>,
pageInfo?: FieldPolicy<any> | FieldReadFunction<any>,
totalCount?: FieldPolicy<any> | FieldReadFunction<any>
};
export type PhenotypeEdgeKeySpecifier = ('cursor' | 'node' | PhenotypeEdgeKeySpecifier)[];
export type PhenotypeEdgeFieldPolicy = {
cursor?: FieldPolicy<any> | FieldReadFunction<any>,
node?: FieldPolicy<any> | FieldReadFunction<any>
};
export type PhenotypePopoverKeySpecifier = ('assertionCount' | 'description' | 'evidenceItemCount' | 'hpoId' | 'id' | 'link' | 'molecularProfileCount' | 'name' | 'url' | PhenotypePopoverKeySpecifier)[];
export type PhenotypePopoverFieldPolicy = {
assertionCount?: FieldPolicy<any> | FieldReadFunction<any>,
Expand All @@ -1825,7 +1851,7 @@ export type PhenotypePopoverFieldPolicy = {
name?: FieldPolicy<any> | FieldReadFunction<any>,
url?: FieldPolicy<any> | FieldReadFunction<any>
};
export type QueryKeySpecifier = ('acmgCode' | 'acmgCodesTypeahead' | 'activities' | 'activity' | 'assertion' | 'assertions' | 'browseDiseases' | 'browseFeatures' | 'browseMolecularProfiles' | 'browseSources' | 'browseVariantGroups' | 'browseVariants' | 'clingenCode' | 'clingenCodesTypeahead' | 'clinicalTrial' | 'clinicalTrials' | 'comment' | 'comments' | 'contributors' | 'countries' | 'dataReleases' | 'disease' | 'diseasePopover' | 'diseaseTypeahead' | 'entityTypeahead' | 'events' | 'evidenceItem' | 'evidenceItems' | 'factor' | 'factors' | 'feature' | 'featureTypeahead' | 'flag' | 'flags' | 'fusion' | 'fusions' | 'gene' | 'genes' | 'molecularProfile' | 'molecularProfiles' | 'nccnGuideline' | 'nccnGuidelinesTypeahead' | 'notifications' | 'organization' | 'organizationLeaderboards' | 'organizations' | 'phenotype' | 'phenotypePopover' | 'phenotypeTypeahead' | 'phenotypes' | 'previewCommentText' | 'previewMolecularProfileName' | 'remoteCitation' | 'revision' | 'revisions' | 'search' | 'searchByPermalink' | 'searchGenes' | 'source' | 'sourcePopover' | 'sourceSuggestionValues' | 'sourceSuggestions' | 'sourceTypeahead' | 'subscriptionForEntity' | 'therapies' | 'therapy' | 'therapyPopover' | 'therapyTypeahead' | 'timepointStats' | 'user' | 'userLeaderboards' | 'userTypeahead' | 'users' | 'validateRevisionsForAcceptance' | 'variant' | 'variantGroup' | 'variantGroups' | 'variantType' | 'variantTypePopover' | 'variantTypeTypeahead' | 'variantTypes' | 'variants' | 'variantsTypeahead' | 'viewer' | QueryKeySpecifier)[];
export type QueryKeySpecifier = ('acmgCode' | 'acmgCodesTypeahead' | 'activities' | 'activity' | 'assertion' | 'assertions' | 'browseDiseases' | 'browseFeatures' | 'browseMolecularProfiles' | 'browsePhenotypes' | 'browseSources' | 'browseTherapies' | 'browseVariantGroups' | 'browseVariants' | 'clingenCode' | 'clingenCodesTypeahead' | 'clinicalTrial' | 'clinicalTrials' | 'comment' | 'comments' | 'contributors' | 'countries' | 'dataReleases' | 'disease' | 'diseasePopover' | 'diseaseTypeahead' | 'diseases' | 'entityTypeahead' | 'events' | 'evidenceItem' | 'evidenceItems' | 'factor' | 'factors' | 'feature' | 'featureTypeahead' | 'flag' | 'flags' | 'fusion' | 'fusions' | 'gene' | 'genes' | 'molecularProfile' | 'molecularProfiles' | 'nccnGuideline' | 'nccnGuidelinesTypeahead' | 'notifications' | 'organization' | 'organizationLeaderboards' | 'organizations' | 'phenotype' | 'phenotypePopover' | 'phenotypeTypeahead' | 'phenotypes' | 'previewCommentText' | 'previewMolecularProfileName' | 'remoteCitation' | 'revision' | 'revisions' | 'search' | 'searchByPermalink' | 'searchGenes' | 'source' | 'sourcePopover' | 'sourceSuggestionValues' | 'sourceSuggestions' | 'sourceTypeahead' | 'sources' | 'subscriptionForEntity' | 'therapies' | 'therapy' | 'therapyPopover' | 'therapyTypeahead' | 'timepointStats' | 'user' | 'userLeaderboards' | 'userTypeahead' | 'users' | 'validateRevisionsForAcceptance' | 'variant' | 'variantGroup' | 'variantGroups' | 'variantType' | 'variantTypePopover' | 'variantTypeTypeahead' | 'variantTypes' | 'variants' | 'variantsTypeahead' | 'viewer' | QueryKeySpecifier)[];
export type QueryFieldPolicy = {
acmgCode?: FieldPolicy<any> | FieldReadFunction<any>,
acmgCodesTypeahead?: FieldPolicy<any> | FieldReadFunction<any>,
Expand All @@ -1836,7 +1862,9 @@ export type QueryFieldPolicy = {
browseDiseases?: FieldPolicy<any> | FieldReadFunction<any>,
browseFeatures?: FieldPolicy<any> | FieldReadFunction<any>,
browseMolecularProfiles?: FieldPolicy<any> | FieldReadFunction<any>,
browsePhenotypes?: FieldPolicy<any> | FieldReadFunction<any>,
browseSources?: FieldPolicy<any> | FieldReadFunction<any>,
browseTherapies?: FieldPolicy<any> | FieldReadFunction<any>,
browseVariantGroups?: FieldPolicy<any> | FieldReadFunction<any>,
browseVariants?: FieldPolicy<any> | FieldReadFunction<any>,
clingenCode?: FieldPolicy<any> | FieldReadFunction<any>,
Expand All @@ -1851,6 +1879,7 @@ export type QueryFieldPolicy = {
disease?: FieldPolicy<any> | FieldReadFunction<any>,
diseasePopover?: FieldPolicy<any> | FieldReadFunction<any>,
diseaseTypeahead?: FieldPolicy<any> | FieldReadFunction<any>,
diseases?: FieldPolicy<any> | FieldReadFunction<any>,
entityTypeahead?: FieldPolicy<any> | FieldReadFunction<any>,
events?: FieldPolicy<any> | FieldReadFunction<any>,
evidenceItem?: FieldPolicy<any> | FieldReadFunction<any>,
Expand Down Expand Up @@ -1890,6 +1919,7 @@ export type QueryFieldPolicy = {
sourceSuggestionValues?: FieldPolicy<any> | FieldReadFunction<any>,
sourceSuggestions?: FieldPolicy<any> | FieldReadFunction<any>,
sourceTypeahead?: FieldPolicy<any> | FieldReadFunction<any>,
sources?: FieldPolicy<any> | FieldReadFunction<any>,
subscriptionForEntity?: FieldPolicy<any> | FieldReadFunction<any>,
therapies?: FieldPolicy<any> | FieldReadFunction<any>,
therapy?: FieldPolicy<any> | FieldReadFunction<any>,
Expand Down Expand Up @@ -2062,6 +2092,19 @@ export type SourceFieldPolicy = {
sourceUrl?: FieldPolicy<any> | FieldReadFunction<any>,
title?: FieldPolicy<any> | FieldReadFunction<any>
};
export type SourceConnectionKeySpecifier = ('edges' | 'nodes' | 'pageCount' | 'pageInfo' | 'totalCount' | SourceConnectionKeySpecifier)[];
export type SourceConnectionFieldPolicy = {
edges?: FieldPolicy<any> | FieldReadFunction<any>,
nodes?: FieldPolicy<any> | FieldReadFunction<any>,
pageCount?: FieldPolicy<any> | FieldReadFunction<any>,
pageInfo?: FieldPolicy<any> | FieldReadFunction<any>,
totalCount?: FieldPolicy<any> | FieldReadFunction<any>
};
export type SourceEdgeKeySpecifier = ('cursor' | 'node' | SourceEdgeKeySpecifier)[];
export type SourceEdgeFieldPolicy = {
cursor?: FieldPolicy<any> | FieldReadFunction<any>,
node?: FieldPolicy<any> | FieldReadFunction<any>
};
export type SourcePopoverKeySpecifier = ('abstract' | 'ascoAbstractId' | 'authorString' | 'citation' | 'citationId' | 'clinicalTrials' | 'comments' | 'deprecated' | 'displayType' | 'events' | 'evidenceItemCount' | 'fullJournalTitle' | 'fullyCurated' | 'id' | 'journal' | 'lastCommentEvent' | 'link' | 'name' | 'openAccess' | 'pmcId' | 'publicationDate' | 'publicationDay' | 'publicationMonth' | 'publicationYear' | 'retracted' | 'retractionDate' | 'retractionNature' | 'retractionReasons' | 'sourceType' | 'sourceUrl' | 'title' | SourcePopoverKeySpecifier)[];
export type SourcePopoverFieldPolicy = {
abstract?: FieldPolicy<any> | FieldReadFunction<any>,
Expand Down Expand Up @@ -2308,6 +2351,19 @@ export type TherapyFieldPolicy = {
therapyAliases?: FieldPolicy<any> | FieldReadFunction<any>,
therapyUrl?: FieldPolicy<any> | FieldReadFunction<any>
};
export type TherapyConnectionKeySpecifier = ('edges' | 'nodes' | 'pageCount' | 'pageInfo' | 'totalCount' | TherapyConnectionKeySpecifier)[];
export type TherapyConnectionFieldPolicy = {
edges?: FieldPolicy<any> | FieldReadFunction<any>,
nodes?: FieldPolicy<any> | FieldReadFunction<any>,
pageCount?: FieldPolicy<any> | FieldReadFunction<any>,
pageInfo?: FieldPolicy<any> | FieldReadFunction<any>,
totalCount?: FieldPolicy<any> | FieldReadFunction<any>
};
export type TherapyEdgeKeySpecifier = ('cursor' | 'node' | TherapyEdgeKeySpecifier)[];
export type TherapyEdgeFieldPolicy = {
cursor?: FieldPolicy<any> | FieldReadFunction<any>,
node?: FieldPolicy<any> | FieldReadFunction<any>
};
export type TherapyPopoverKeySpecifier = ('assertionCount' | 'deprecated' | 'evidenceItemCount' | 'id' | 'link' | 'molecularProfileCount' | 'myChemInfo' | 'name' | 'ncitId' | 'therapyAliases' | 'therapyUrl' | TherapyPopoverKeySpecifier)[];
export type TherapyPopoverFieldPolicy = {
assertionCount?: FieldPolicy<any> | FieldReadFunction<any>,
Expand Down Expand Up @@ -2904,6 +2960,14 @@ export type StrictTypedTypePolicies = {
keyFields?: false | DiseaseKeySpecifier | (() => undefined | DiseaseKeySpecifier),
fields?: DiseaseFieldPolicy,
},
DiseaseConnection?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | DiseaseConnectionKeySpecifier | (() => undefined | DiseaseConnectionKeySpecifier),
fields?: DiseaseConnectionFieldPolicy,
},
DiseaseEdge?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | DiseaseEdgeKeySpecifier | (() => undefined | DiseaseEdgeKeySpecifier),
fields?: DiseaseEdgeFieldPolicy,
},
DiseasePopover?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | DiseasePopoverKeySpecifier | (() => undefined | DiseasePopoverKeySpecifier),
fields?: DiseasePopoverFieldPolicy,
Expand Down Expand Up @@ -3236,6 +3300,14 @@ export type StrictTypedTypePolicies = {
keyFields?: false | PhenotypeKeySpecifier | (() => undefined | PhenotypeKeySpecifier),
fields?: PhenotypeFieldPolicy,
},
PhenotypeConnection?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | PhenotypeConnectionKeySpecifier | (() => undefined | PhenotypeConnectionKeySpecifier),
fields?: PhenotypeConnectionFieldPolicy,
},
PhenotypeEdge?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | PhenotypeEdgeKeySpecifier | (() => undefined | PhenotypeEdgeKeySpecifier),
fields?: PhenotypeEdgeFieldPolicy,
},
PhenotypePopover?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | PhenotypePopoverKeySpecifier | (() => undefined | PhenotypePopoverKeySpecifier),
fields?: PhenotypePopoverFieldPolicy,
Expand Down Expand Up @@ -3300,6 +3372,14 @@ export type StrictTypedTypePolicies = {
keyFields?: false | SourceKeySpecifier | (() => undefined | SourceKeySpecifier),
fields?: SourceFieldPolicy,
},
SourceConnection?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | SourceConnectionKeySpecifier | (() => undefined | SourceConnectionKeySpecifier),
fields?: SourceConnectionFieldPolicy,
},
SourceEdge?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | SourceEdgeKeySpecifier | (() => undefined | SourceEdgeKeySpecifier),
fields?: SourceEdgeFieldPolicy,
},
SourcePopover?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | SourcePopoverKeySpecifier | (() => undefined | SourcePopoverKeySpecifier),
fields?: SourcePopoverFieldPolicy,
Expand Down Expand Up @@ -3416,6 +3496,14 @@ export type StrictTypedTypePolicies = {
keyFields?: false | TherapyKeySpecifier | (() => undefined | TherapyKeySpecifier),
fields?: TherapyFieldPolicy,
},
TherapyConnection?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | TherapyConnectionKeySpecifier | (() => undefined | TherapyConnectionKeySpecifier),
fields?: TherapyConnectionFieldPolicy,
},
TherapyEdge?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | TherapyEdgeKeySpecifier | (() => undefined | TherapyEdgeKeySpecifier),
fields?: TherapyEdgeFieldPolicy,
},
TherapyPopover?: Omit<TypePolicy, "fields" | "keyFields"> & {
keyFields?: false | TherapyPopoverKeySpecifier | (() => undefined | TherapyPopoverKeySpecifier),
fields?: TherapyPopoverFieldPolicy,
Expand Down
Loading
Loading