merge fixes

README.md

@@ -28,13 +28,13 @@ This is _highly_ recommended to manage different dependencies required by differ
 
     `<your_env>` is the name of your environment (ie purity_review_env). Check the corresponding reviewer's `setup.py` file to get the proper python version for `py_version`. Reviewers have been tested on `3.8` and `3.9`.
 
-4. Activate your conda environment
+3. Activate your conda environment
    ```
    conda activate <your_env>
    ```
    **You'll want your environment activated when you install AnnoMate in any of the below mentioned ways** 
 
-5. Add conda environment to ipykernel<sup>2</sup>
+4. Add conda environment to ipykernel<sup>2</sup>
 
     When you open a jupyter notebook, you can change the environment the notebook cells are run in to `<your_env>`
 
@@ -68,7 +68,7 @@ If you have not made a new conda environment:
 conda env create --file annomate_conda_environment.yml --name <your_env>
 conda activate <your_env>
 ```
-Make sure to add conda environment to ipykernel (see **5. Add conda environment to ipykernel**)
+Make sure to add conda environment to ipykernel (see **4. Add conda environment to ipykernel**)
 
 ### Run with a Docker container
 

catalog/ReviewerCatalog.ipynb

@@ -360,7 +360,7 @@
    "source": [
     "# Create a reviewer suite\n",
     "\n",
-    "See [Developer_AnnoMate_Tutorial.ipynb](https://github.com/getzlab/AnnoMate/blob/master/example_notebooks/Developer_AnnoMate_Tutorial.ipynb) for instructions on how to create a reviewer."
+    "See [Developer_AnnoMate_Tutorial.ipynb](https://github.com/getzlab/AnnoMate/blob/master/tutorial_notebooks/Developer_AnnoMate_Tutorial.ipynb) for instructions on how to create a reviewer."
    ]
   }
  ],

setup.py

@@ -5,7 +5,7 @@
 
 setuptools.setup(
     name="AnnoMate",
-    version="1.0.0",
+    version="1.0.1",
     author="Claudia Chu",
     author_email="[email protected]",
     description="A general tool to create dashboards for manual review",