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docs: formatting to be the same
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clintval committed Jul 23, 2024
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Expand Up @@ -82,7 +82,7 @@ One shortcoming of the existing behavior, which should be corrected at some poin

The tool outputs a table of aggregated breakpoints and a modified copy of the input BAM file where each alignment is tagged with the ID of the aggregate breakpoint it supports (if any).

## `AggregateSvPileupToBedPE`
## `fgsv AggregateSvPileupToBedPE`

Converts the output of `AggregateSvPileup` to the [BEDPE format](https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format).

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