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VIP processing through Shanoir

Youenn edited this page Oct 25, 2023 · 16 revisions

Virtual Imaging Platform (VIP)

VIP (https://vip.creatis.insa-lyon.fr/) is a web portal for medical imaging applications. It allows access to scientific applications as a service, as well as distributed computing resources available in the biomed virtual organization of the EGI e-infrastructure.

Interface with Shanoir

Shanoir allow an authenticated user to start executions on VIP platform

Operation

Prerequisite

To access VIP pipelines and start execution from Shanoir, the authenticated user must have previously created an account on the VIP platform. This user must have the same email address than the Shanoir account, so that the 2 account can be linked between the two application.

To create an account on VIP, see https://vip.creatis.insa-lyon.fr/sign-up.html.

Selecting dataset(s) to process

Dataset to process through VIP pipeline are selected through the Dataset search (Solr) view.

Once the selection made, click the Run a process button. The user must have admin rights on all the selected datasets.

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Choosing a pipeline

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Configuring execution

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Once the execution started, the user is redirected to the Details on dataset processing view.

Following execution

The user can follow the state of the execution through the Jobs view

Accessing results

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