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My institution has nr downloaded in volumes (is that the right word?). The way that manage_blast_db is written, it will only check for nr.psq, nr.phr, and nr.pin when the specified database is nr.
I was able to use the flag --skip_checkdb to bypass that functionality, but I figured I'd bring this edge case to your attention.
Here is how the nr database that I have access to is structured:
Adding onto this to say that I am also in this position. Downloading the nr database in volumes like this is the NCBI recommended way to do it (see Getting the preformatted database files), so it would be nice to have it supported.
My institution has
nr
downloaded in volumes (is that the right word?). The way thatmanage_blast_db
is written, it will only check fornr.psq
,nr.phr
, andnr.pin
when the specified database isnr
.I was able to use the flag
--skip_checkdb
to bypass that functionality, but I figured I'd bring this edge case to your attention.Here is how the
nr
database that I have access to is structured:I hope this helps.
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