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  1. phantasm phantasm Public

    PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

    Python 23

  2. primerForge primerForge Public

    software to identify primers that can distinguish genomes

    Python 20 4

  3. xenoGI xenoGI Public

    Forked from ecbush/xenoGI

    Code for detecting genomic island insertions in clades of microbes. This fork is used specifically for PHANTASM

    Python

  4. pseudofinder pseudofinder Public

    Forked from filip-husnik/pseudofinder

    Detection of pseudogene candidates in bacterial and archaeal genomes.

    Python

  5. bioconda-recipes bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell

  6. lyve-SET lyve-SET Public

    Forked from lskatz/lyve-SET

    💃 🌴 LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

    Perl