GWAS_workshop

How to GWAS

Usage

The jupyter notebooks can be used in an executable environment by clicking the Binder badge above.

To use the notebooks locally, download the notebook(s) of choice and from that directory run

jupyter notebook

To make sure all required packages are installed, it's practical to create the conda environment locally. Download environment.yml

conda env create -f environment.yml

To activate this environment (do this in each new bash window)

conda activate limix

Click here for more information on conda environments. When conda and/or jupyter are not installed locally, we advise installing anaconda.

Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
.ipynb_checkpoints		.ipynb_checkpoints
data		data
prerun_results		prerun_results
results		results
0_running_Jupyter_notebooks.ipynb		0_running_Jupyter_notebooks.ipynb
1_phenotype_exploration.ipynb		1_phenotype_exploration.ipynb
2_GWAS.ipynb		2_GWAS.ipynb
3_GWAS_interpretation.ipynb		3_GWAS_interpretation.ipynb
GWAS_presentation_04May2021.pdf		GWAS_presentation_04May2021.pdf
GWAS_presentation_20Sept2020.pdf		GWAS_presentation_20Sept2020.pdf
GWAS_presentation_30Jan2020.pdf		GWAS_presentation_30Jan2020.pdf
Instructions_for_Independent_Work.pdf		Instructions_for_Independent_Work.pdf
LICENSE		LICENSE
README.md		README.md
environment.yml		environment.yml