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17 Open 3 Closed
17 Open 3 Closed
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Issues list

Ensure fetch_assay_data(facile_frame, as.matrix = TRUE) and biocbox(facile_frame) return data in same order as query
#30 opened May 24, 2024 by lianos
with_sample_covariates() throws incoherent error when fetching a covariate that doesn't exist in the datastore bug Something isn't working
#29 opened Jan 10, 2024 by lianos
@lianos
Mark FacileData::as.<BiocBox> functions as .Defunct() enhancement New feature or request
#27 opened Sep 6, 2023 by tomsing1
@lianos
2
Pepper "samples_dropped" attributes into appropriate facile_frame manipulation functions
#25 opened Aug 17, 2023 by lianos
@lianos
Create unit test to exercise batch correction with both a batch and main effect.
#22 opened Apr 3, 2023 by lianos
@lianos
Update facilebio repository GitHub Actions to include GITHUB_PAT bug Something isn't working
#20 opened Aug 11, 2021 by lianos
@lianos
Be more explicit for expected tibble outputs in unit tests enhancement New feature or request
#16 opened Jun 1, 2020 by lianos
6 tasks
@lianos
as.EAVtable chokes on data columns bug Something isn't working enhancement New feature or request
#15 opened May 7, 2020 by lianos
@lianos
Change names of assay types (rnaseq -> counts)
#14 opened Mar 17, 2020 by lianos
Updated version of edgeR throws "norm factors don't multiply to 1" warnings
#13 opened Mar 3, 2020 by lianos
3 tasks
@lianos
Need better error message when fetch_assay_data() is called with invalid features enhancement New feature or request
#11 opened Jan 31, 2020 by lianos
@lianos
Create a core assemble_data worker function for as.DGEList to rely on enhancement New feature or request
#9 opened Jan 22, 2020 by lianos
@lianos
Implement "source agnostic" (fetch|with)_data retrieval functions enhancement New feature or request
#8 opened Dec 6, 2019 by lianos
@lianos
Sketch out current and next dbschema
#5 opened Aug 20, 2019 by lianos
Better handle zero-row facile_frames while fetching data
#4 opened Jul 26, 2019 by lianos
@lianos
Add full support for (fetch|with)_assay_covariates to FacileData API enhancement New feature or request
#2 opened Apr 24, 2019 by lianos
4 tasks
@lianos
More dplyr-like filter_samples -> samples(fds) %>% filter(...)?
#1 opened Feb 6, 2019 by lianos
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