GitHub - estolle/ngs

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
README		README
REF.zsh		REF.zsh
SNP-call.MT.zsh		SNP-call.MT.zsh
SNP-call.zsh		SNP-call.zsh
SNP-genotype-filtering.zsh		SNP-genotype-filtering.zsh
SNP-genotype-filtering_loCov.zsh		SNP-genotype-filtering_loCov.zsh
SNP-genotyping.zsh		SNP-genotyping.zsh
VCF-genotypesummary-plot.R		VCF-genotypesummary-plot.R
VCF-genotypingstats-plot.R		VCF-genotypingstats-plot.R
VCF-histogram-plot.R		VCF-histogram-plot.R
es.r		es.r
fastq_compress.zsh		fastq_compress.zsh
fastq_decompress.zsh		fastq_decompress.zsh
filter_QCplot.R		filter_QCplot.R
filter_QCplot_no-sickle_no-clumpify.R		filter_QCplot_no-sickle_no-clumpify.R
filter_skewer.zsh		filter_skewer.zsh
filter_skewer_SE.zsh		filter_skewer_SE.zsh
illumina.fwd.adapters.fa		illumina.fwd.adapters.fa
illumina.rev.adapters.fa		illumina.rev.adapters.fa
kmer_findGSE.R		kmer_findGSE.R
mapping_bwa.zsh		mapping_bwa.zsh
maxnumber.R		maxnumber.R
meanwindows.R		meanwindows.R
medianwindows.R		medianwindows.R
mosdepth.zsh		mosdepth.zsh
plotKMCgenomesize.dynamic.minimum.R		plotKMCgenomesize.dynamic.minimum.R
plotKMCgenomesize.dynamic.minimum.large.R		plotKMCgenomesize.dynamic.minimum.large.R
plotKMCgenomesize.dynamic.minimum.small_genomesize.R		plotKMCgenomesize.dynamic.minimum.small_genomesize.R
repeatmasker.zsh		repeatmasker.zsh
sumnumber.R		sumnumber.R
tajD_windows.R		tajD_windows.R
vcfreheader.zsh		vcfreheader.zsh

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This is a git repo of Eckart Stolle.
It contains various shell and R scripts for basic genomics analyses.

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