Segfault in CI #393
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| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Run Basic Tests | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up NetCDF4 with HDF5 support | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libnetcdf-dev libhdf5-dev | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest | |
| if ${{ matrix.python-version == '3.12' }}; then pip install --upgrade setuptools; fi | |
| - name: Install package | |
| run: | | |
| python -m pip install .[dev] | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test if data will work (Meta-Test) | |
| run: | | |
| export HDF5_DEBUG=1 | |
| export NETCDF_DEBUG=1 | |
| pytest -vvv -s --cov tests/meta/*.py | |
| - name: Test with pytest (Unit) | |
| run: | | |
| pytest -vvv -s --cov tests/unit/*.py | |
| - name: Test with pytest (Integration) | |
| run: | | |
| pytest -vvv -s --cov tests/integration/*.py | |
| - name: Test with doctest | |
| run: | | |
| PYTHONPATH=src pytest -v --doctest-modules src/ |