memory limit

[jorgens]

I am reaching the preset memory limit and cannot seem to find a way to add more memory?

GAPError: Error, reached the pre-set memory limit
(change it with the -o command line option)

Any ideas?

[embray]

Hi @jorgens thanks for your interest in gappy. Unfortunately I haven't had the availability to work in it in some time though I would really love to get a final "1.0" release out sometime...

This is an interesting question--the memory limit should definitely be more easily customizable but at the moment it's not really. This is how the default memory limits are calculated:

gappy/gappy/utils.pyx

Line 152 in a0642c4

cpdef get_gap_memory_pool_size(unit='m'):

You could try changing it there and re-compiling from source.

[jorgens]

Hi @embray, thanks for your reply and no worries! I am just really happy I found your Python GAP integration. It has been extremely helpful in my project! I will have a look at the function you pointed to.

[embray]

Thanks for the feedback.. I'm going re-open this as a reminder that the memory pool size should be more easily configurable.